DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tfb1 and gtf2h1

DIOPT Version :9

Sequence 1:NP_001246321.1 Gene:Tfb1 / 36598 FlyBaseID:FBgn0033929 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001004596.1 Gene:gtf2h1 / 447857 ZFINID:ZDB-GENE-040912-164 Length:550 Species:Danio rerio


Alignment Length:594 Identity:264/594 - (44%)
Similarity:368/594 - (61%) Gaps:61/594 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADIKTQKISPEGKPKVQL 65
            |.:.||:|||.:..||.:|.|||||:|.||:||..|.:|..||||.||||:.|||||:||.|:||
Zfish     1 MASLSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGKAKIQL 65

  Fly    66 QVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQQLLPNFKRKVDKDLEDKNRILVENPNLLQL 130
            |:|||.|..:||||.|   ::..|.||:..|||||||||.||:|.:|:||:|||:|.|:|.|.||
Zfish    66 QLVLHTGENTTFHFAN---ESTALKDREAAKELLQQLLPKFKKKANKELEEKNRMLQEDPVLFQL 127

  Fly   131 YKDLVITKVLTSDEFWAT----HAKDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSD 191
            |||||:::|::::||||.    ::.||: ......||:|:|.||||||:|||||||||:||||||
Zfish   128 YKDLVVSQVISAEEFWANRMSLNSVDHS-PSSNNVQEVGISAAFLADIRPQTDGCNGLRYNLTSD 191

  Fly   192 VIHCIFKTYPAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKIDDQALKA 256
            :|..||:|||.||:|:.||||..|:|.||||:|||||||||||:..|.:|||:||.|.|::.||:
Zfish   192 IIESIFRTYPTVKQKYAENVPHNMTEKEFWTRFFQSHYFHRDRINTGQQDIFSECAKQDEKGLKS 256

  Fly   257 AVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN----MIKRFNQHSIMVLKTCA 317
            .|.||..:|::||...||..|:||:|:.|.......:...:.:|    :|||||.||.|||..  
Zfish   257 MVTQGVKNPMVDLLALEDKTLDEGYGTAAAPPASNTANKTLRENSNSAIIKRFNHHSAMVLAA-- 319

  Fly   318 NVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKGQATATATKSSSDQVDKD--EPQSKKQRLMEKI 380
                       |...|..|..|::.|:..:|..:             |.|  :|..||.:|.|.|
Zfish   320 -----------GLRKAEAPSDQASETSSTDGNSR-------------DSDFFQPPLKKVKLQEAI 360

  Fly   381 HYVDLGDPILEGDDSANGEKAKSKHFELSKVERYLNGPV--QNSMYDNHNDPM-SLEEVQYKLVR 442
            .|          ||..|....|:....|.|.:||.:|||  |:..|....|.: |:..:|::: |
Zfish   361 EY----------DDLQNDSGRKTIALNLKKSDRYAHGPVPLQSQHYSTSQDIINSISIIQHEM-R 414

  Fly   443 NSESWLNRNVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLYLSLSELL 507
            :.:..|.:     .:.|.||.:|:..|||||.:|:...:|:..||||.|.|.||:|||.:..|||
Zfish   415 SYKPQLTQ-----VMSSSAASSAISALSPGGVLMQSAGQQTIHQLVPADVQSELKHLYTAAGELL 474

  Fly   508 KHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHELSPLRSSLTQHLNQLLRTANSK 572
            :|||||||..:..||.|:.:|...|:||::.||.||:.:...:.  |.::||.||.::.:.|.||
Zfish   475 RHFWSCFPVNTPFLEEKVLKMKSNLERFQVTKLRPFQEKIQRQY--LSTNLTGHLEEMFQAAYSK 537

  Fly   573 FATWKERKL 581
            |..|:.|::
Zfish   538 FQAWQTRRM 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tfb1NP_001246321.1 PH_TFIIH 10..104 CDD:270049 54/93 (58%)
BSD 104..157 CDD:128990 28/56 (50%)
BSD 181..234 CDD:281847 38/52 (73%)
gtf2h1NP_001004596.1 PH_TFIIH 9..102 CDD:270049 56/95 (59%)
BSD 101..153 CDD:128990 26/51 (51%)
BSD 181..236 CDD:281847 40/54 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594947
Domainoid 1 1.000 187 1.000 Domainoid score I3277
eggNOG 1 0.900 - - E1_KOG2074
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3885
Inparanoid 1 1.050 477 1.000 Inparanoid score I1441
OMA 1 1.010 - - QHG55753
OrthoDB 1 1.010 - - D355210at33208
OrthoFinder 1 1.000 - - FOG0004248
OrthoInspector 1 1.000 - - oto40034
orthoMCL 1 0.900 - - OOG6_103656
Panther 1 1.100 - - LDO PTHR12856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1500
SonicParanoid 1 1.000 - - X4051
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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