DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tfb1 and tfb1

DIOPT Version :9

Sequence 1:NP_001246321.1 Gene:Tfb1 / 36598 FlyBaseID:FBgn0033929 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_594223.2 Gene:tfb1 / 2542336 PomBaseID:SPAC16E8.11c Length:533 Species:Schizosaccharomyces pombe


Alignment Length:575 Identity:132/575 - (22%)
Similarity:236/575 - (41%) Gaps:128/575 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 YKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADIKTQKISPEGKPKVQLQV--VLHDGNTST--- 76
            ::|..|.|.: :.|:.|..|.:.|.:|...:..|...:.:|...|||.::|  |:.:|...|   
pombe    11 FRKKQGVLSI-DSRLKWTGEGKTTPSVDIAFDAISNLQTTPASNPKVMIRVFIVVKEGEDPTSLV 74

  Fly    77 FHFV---NRQGQAAMLADRDKVKELLQQLLPNFKRK-------------VDKDLEDKNRILVENP 125
            |||.   |.:....|:.  ::::..:|:.....:.|             ::||::.:..:|..||
pombe    75 FHFTGTPNARENCDMIT--NELRNAIQRQREGSQSKPQGANVDRVNSTNLEKDIDLQESLLTNNP 137

  Fly   126 NLLQLYKDLVITKVLTSDEFWATH---AKDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYN 187
            :|||.:|:.|:...|::::||:|.   .:.||::   |||:.|.... |:.|||:|.. |.:|.:
pombe   138 DLLQTFKEAVMKGHLSNEQFWSTRLHLLRAHAVE---RS
QQRGPYNV-LSTIKPKTVD-NQMKVS 197

  Fly   188 LTSDVIHCIFKTYPAVKRKHFENVPAKMSEAEFWTKFFQSHYFHR---DRLTA--GTKDIFTECG 247
            ||...||.:|:.:|.:::.:.::|| .::|.|||::||.|....:   ||:|.  .:.||..:..
pombe   198 LTGQQIHDMFEQHPLLRKVYDKHVP-PLAEGEFWSRFFLSKLCKKLRGDRITPMDPSDDIMDKYL 261

  Fly   248 KIDDQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQ------------- 299
            |.:::..|.: .:.....|.||         ||     .|:|    .|::.:             
pombe   262 KDNEEVTKVS-DEPIASHLFDL---------EG-----NDQN----ANVIAELRPDITMRIDKEA 307

  Fly   300 -NMIKRFNQHSIMVL-------KTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKGQATATA 356
             ..:|..||.|..:|       |...|.........:|.::.....|.|.....:.|:.|.....
pombe   308 LPFMKNINQLSERLLEKSLGNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKGQDQLLENN 372

  Fly   357 TKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPI----LEGDDSANGEKA-------KSKH-FELS 409
            ...|.:||..:...|     :|.:.::...|.|    :|.|..:..|.|       :.|| ||  
pombe   373 FVPSKNQVGLEPLPS-----LEALQHLYQEDSISLNHIEHDSDSLAEAAMQLTQSMREKHEFE-- 430

  Fly   410 KVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESW---LNRN---------VQRTFICSKAA 462
                 .:|...|...|..|:.:....|..:.:.  :.|   ||..         :|...:.||..
pombe   431 -----THGTASNLPIDIKNEIVLCHTVTIEFLH--QFWNALLNTTFPDKKAMAPLQNALLNSKKR 488

  Fly   463 VNALGELSPGGSMMRGFQEQSAG-QLVPNDFQRELRHLYLSLSELLKHFWSCFPP 516
            |.|:...:         |||:.. :||.......|..:..|:||..:..  .:||
pombe   489 VEAIASQA---------QEQNVDPKLVYELVSCTLTSIDTSISEYQRRM--SYPP 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tfb1NP_001246321.1 PH_TFIIH 10..104 CDD:270049 23/94 (24%)
BSD 104..157 CDD:128990 17/68 (25%)
BSD 181..234 CDD:281847 17/55 (31%)
tfb1NP_594223.2 PH_TFIIH 10..95 CDD:285736 22/86 (26%)
BSD 123..173 CDD:281847 16/52 (31%)
BSD 190..245 CDD:281847 17/56 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2074
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004248
OrthoInspector 1 1.000 - - oto100941
orthoMCL 1 0.900 - - OOG6_103656
Panther 1 1.100 - - LDO PTHR12856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1500
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.840

Return to query results.
Submit another query.