DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tfb1 and Gtf2h1

DIOPT Version :9

Sequence 1:NP_001246321.1 Gene:Tfb1 / 36598 FlyBaseID:FBgn0033929 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001347004.1 Gene:Gtf2h1 / 14884 MGIID:1277216 Length:554 Species:Mus musculus


Alignment Length:591 Identity:267/591 - (45%)
Similarity:374/591 - (63%) Gaps:58/591 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADIKTQKISPEGKPKVQL 65
            |.||||:|||.:.:||.||.||.||:|.||:||..|.:|..|:||.|||||.||||||||.|:||
Mouse     8 MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQL 72

  Fly    66 QVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQQLLPNFKRKVDKDLEDKNRILVENPNLLQL 130
            |:|||.|:|:.|||.|   ::..:.:||.||:|||||||.||||.:|:||:|||:|.|:|.|.||
Mouse    73 QLVLHAGDTTNFHFSN---ESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQEDPVLFQL 134

  Fly   131 YKDLVITKVLTSDEFWATHAKDHALKKMGRS--QEIGVSGAFLADIKPQTDGCNGLKYNLTSDVI 193
            |||||:::|::::||||.....:|......|  |::|:|.|||||::|||||||||:||||||:|
Mouse   135 YKDLVVSQVISAEEFWANRLNVNATDSSTSSHKQDVGISAAFLADVRPQTDGCNGLRYNLTSDII 199

  Fly   194 HCIFKTYPAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKIDDQALKAAV 258
            ..||:||||||.|:.|.||..|:|.||||:||||||||||||..|:||:|.||.|||::.||..|
Mouse   200 ESIFRTYPAVKMKYAETVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKDLFAECAKIDEKGLKTMV 264

  Fly   259 QQGAGDPLLDLKKFEDVPLEEGFG-----SVAGDRNVVNSGNIVHQNMIKRFNQHSIMVLKTCAN 318
            ..|..:|:|||...||.||:||:|     |.:..:::..:.|..   :|||||.||.|||     
Mouse   265 SLGVKNPMLDLTSLEDKPLDEGYGISSVPSTSNSKSIKENSNAA---IIKRFNHHSAMVL----- 321

  Fly   319 VTSAPSTMTNGTNNANGPVSQSAYTNGMNGKGQATATATKSSSDQVDKDEPQSKKQRLMEKIHYV 383
                          |.|...|.| .||.||:    .::...:|...|..:|..|:.:|.|.|.|.
Mouse   322 --------------AAGLRKQQA-QNGQNGE----PSSVDGNSGDTDCFQPAVKRAKLQESIEYE 367

  Fly   384 DLGDPILEGDDSANGEKAKSKHFELSKVERYLNG--PVQNSMYDNHNDPM-SLEEVQYKLVRNSE 445
            |||          |....|:....|.|.:||.:|  |:|:..|....|.: |.:.::.::    |
Mouse   368 DLG----------NNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEM----E 418

  Fly   446 SWLNRNVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLYLSLSELLKHF 510
            ::..:..|  .:.|.||.:.:..|||||::|:|..:|:..|:||||.|.||:|||:::.|||:||
Mouse   419 AYTPKLTQ--VLSSSAASSTITALSPGGALMQGGTQQAVNQMVPNDIQSELKHLYVAVGELLRHF 481

  Fly   511 WSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHELSPLRSSLTQHLNQLLRTANSKFAT 575
            |||||..:..||.|:.:|...|:||::.||.||:.:...:.  |.::|..|:.::|:||.:|...
Mouse   482 WSCFPVNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQY--LSTNLVSHIEEMLQTAYNKLHA 544

  Fly   576 WKERKL 581
            |:.|:|
Mouse   545 WQSRRL 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tfb1NP_001246321.1 PH_TFIIH 10..104 CDD:270049 54/93 (58%)
BSD 104..157 CDD:128990 28/52 (54%)
BSD 181..234 CDD:281847 38/52 (73%)
Gtf2h1NP_001347004.1 PH_TFIIH 16..109 CDD:270049 56/95 (59%)
BSD 108..161 CDD:128990 28/52 (54%)
BSD 188..238 CDD:128990 35/49 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849353
Domainoid 1 1.000 200 1.000 Domainoid score I3042
eggNOG 1 0.900 - - E1_KOG2074
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3885
Inparanoid 1 1.050 493 1.000 Inparanoid score I1389
Isobase 1 0.950 - 0.928771 Normalized mean entropy S3315
OMA 1 1.010 - - QHG55753
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004248
OrthoInspector 1 1.000 - - oto92924
orthoMCL 1 0.900 - - OOG6_103656
Panther 1 1.100 - - LDO PTHR12856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1500
SonicParanoid 1 1.000 - - X4051
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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