DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shrm and Shroom1

DIOPT Version :9

Sequence 1:NP_001097307.1 Gene:Shrm / 36592 FlyBaseID:FBgn0085408 Length:1576 Species:Drosophila melanogaster
Sequence 2:NP_082193.2 Gene:Shroom1 / 71774 MGIID:1919024 Length:823 Species:Mus musculus


Alignment Length:1012 Identity:192/1012 - (18%)
Similarity:291/1012 - (28%) Gaps:366/1012 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   634 GSNSASTRDC------------SSPTPPPPPRRSGSLLPNLLRRSSSASDYAEFRE----LHQAQ 682
            ||.|.:::|.            :..:.|..|...||  |..|.|..:...||...|    .|.|:
Mouse    68 GSQSPTSKDAVLSTTQRPVQAVAGHSDPRSPEVQGS--PGPLNRQDTPLLYALAAEAEATAHTAE 130

  Fly   683 GQVKGPSIRNISNAEKISFNDCGMPPPPPPPRGRLAVPTRRTSSATEYAPMRDKLLLQQAAALAH 747
                                      ||.||..|.|              .|.:|...|...|..
Mouse   131 --------------------------PPSPPASRDA--------------YRQRLQGAQRRVLRE 155

  Fly   748 QQHHPQQHRHAQP----PHVPPERPPKHPNLRVPSPELPPPPQSELDISYTFDEPLPPPPPPEVL 808
            .....::.|.:.|    |.||...|..|......|.||..            :||.....|....
Mouse   156 TSFQRKEFRMSLPGRLRPAVPTRLPTAHVRSASSSQELGE------------EEPARTAVPALAA 208

  Fly   809 QPRPPPSPNRRNC------------FAGAST---RRTTYEAPPPTAIVAAKVPPLVPKKPTSLQH 858
            ..|...|..:|.|            ::|..|   .|..|........:.||...|:  :..||..
Mouse   209 AGRGRLSSQQRQCCFSEPGKLHRVGWSGGPTGEDLRKDYSTQELQRGMHAKSKGLL--ETQSLSS 271

  Fly   859 KHLANGGG--GSRKRPHHATPQPILENVASPVAPPPPLLPRARSTAHDNVIASNLESNQQKRSNS 921
            ..|.:|..  |:..||...:     ::|:..|..|                     ....:|:.:
Mouse   272 TELNSGPADLGNAHRPAGRS-----QSVSGEVMGP---------------------CKGSERTVA 310

  Fly   922 KASYLPRQSLEKLNNTDPDHGIYKLTLTSNEDL---VAHTKPSYG-----VTGKLPNNLPDVLPL 978
            ....:|:::                      |:   :.|||.|..     |||..|.......|.
Mouse   311 TVQAVPQRA----------------------DIRRPLLHTKLSRSLTQKEVTGVCPGEALQTKPA 353

  Fly   979 GV--KLHQQPKLQPGSPNGDANVTLRYGSNNNLTGNSPTVAPPPYYGGGQRYSTPVLGQGYGKSS 1041
            |.  ::.:.....||....:.:|.||                                  ..|:.
Mouse   354 GCGRRISETSVSTPGPSLPEDDVFLR----------------------------------EAKTP 384

  Fly  1042 KPVTPQQYTRSQSYDVKHTSAVTMPTMSQSHVDLKQAAHDLETTLEEVLPTATPTPTPTPTPTPP 1106
            .|...|....|.||             .|...||.:.|..:..:.|..|     ..||..|.|..
Mouse   385 SPQDSQGLPTSTSY-------------RQYENDLSKKAGQIAVSAERPL-----HETPGITGTED 431

  Fly  1107 RLSPASSHSDCSLSTSSLECTINPIAT--------PIPKPEAHIFRAEVISTTLNTNPLTTPPKP 1163
            .....:...|.|..||..|.|.:.|.|        |              |......||..||..
Mouse   432 CGQAVNGSVDLSRPTSIPETTNDDIPTFDTNGTTDP--------------SAATEKKPLKPPPVD 482

  Fly  1164 AMNRQESLRENIEKITQLQSVLMSAHLCDASLLGGYTTPLITSPTASFAN--------EPLMTPP 1220
            .:...:|....            |.|  ..||..|......|.|:..|..        :|.::..
Mouse   483 VLRPSDSETPG------------SPH--HTSLTWGQFDSKTTWPSRHFEALVQELARLDPSLSRT 533

  Fly  1221 L--PPSPPPP------LEPEEEEEQEENDVHDKQPEIEEL--QLMQRSELVLMVNPKPSTTDMAC 1275
            |  .|.|.||      |.|.||....      .:|.:||:  :....||            :.:|
Mouse   534 LAAQPGPEPPQGLLDGLFPVEEIRSA------MRPALEEMGEKAAGASE------------EGSC 580

  Fly  1276 QTDELEDRDTDLEAAREEHQTRTTLQPRQRQPIELDYEQMSRELVKLLPPGDKIADILTPKICKP 1340
            .....:|..|..||:|.|:.|.             |.:|.|         |.:..:         
Mouse   581 GHHLTQDLQTSQEASRSENSTP-------------DPDQSS---------GQEFPE--------- 614

  Fly  1341 TSQYVSNLYNPDVPLRLAKRDVGTSTLMRMKSITSSAEIRVVSVELQLAEPSEEPTNLIKQKMDE 1405
                                  |.||                                 :.|..|
Mouse   615 ----------------------GNST---------------------------------QAKKVE 624

  Fly  1406 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLS 1470
            |.:.|.:.:..|..||:.:....:...:....|.|.:::...|.|..:||..:..:..:..|||.
Mouse   625 LARLLQKMLQDLHAEQERLRGTAADWTQRNGALEAAVSQACTPRELERFRRFMTDLERVLGLLLL 689

  Fly  1471 LSERLAQTESSL-----ETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA 1530
            |..||.:...:|     .:...||.:|..:..||..|.|||:.||..:.||..::..:|.:.|.|
Mouse   690 LGSRLVRVNLALARAGSNSDPDERASLLQRLQLLQRQQEEAKELKEHVARREQTLRQVLERELPA 754

  Fly  1531 DMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSL 1567
            :....|...:..||::::..|.|..||:..::||.::
Mouse   755 EHLRSYCVLLASKARILSQQRSLDDRIRFLKDQLDTI 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShrmNP_001097307.1 ASD2 1318..1570 CDD:285850 49/255 (19%)
Shroom1NP_082193.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..110 7/39 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..159 12/74 (16%)
ASD1 <140..239 CDD:285851 23/124 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..200 6/30 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 270..303 8/58 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 349..375 4/25 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..503 24/115 (21%)
ASD2 519..794 CDD:285850 75/377 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..620 18/151 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847491
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15012
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.030

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