DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shrm and shroom1

DIOPT Version :9

Sequence 1:NP_001097307.1 Gene:Shrm / 36592 FlyBaseID:FBgn0085408 Length:1576 Species:Drosophila melanogaster
Sequence 2:XP_687790.6 Gene:shroom1 / 559364 ZFINID:ZDB-GENE-091204-385 Length:1347 Species:Danio rerio


Alignment Length:1518 Identity:305/1518 - (20%)
Similarity:520/1518 - (34%) Gaps:408/1518 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 SMSDISEASHATGYSAISESVSSSQRIVHSSRVPTP---KRHHSESVLYLHNNEEQGDSSPTASN 312
            |:...:...|:.|.||.| |.|....:   ...|:|   ....|:|:.|......:...||||.:
Zfish    31 SIDQYTHHHHSKGDSAYS-SFSGGSTV---PDYPSPFLLDELQSQSLHYNDLKHVKAKYSPTALD 91

  Fly   313 S-----SQMMISEEANGE-----------ESPPSVQPLRIQHRHSPSYPPVHTSMVLHHF--QQQ 359
            |     .|:..|.|...:           |.||        |...|..||...:. |:.|  .:.
Zfish    92 SDSKSMDQLYRSMEIVSKPHWSSSGFPKIEDPP--------HPLLPPPPPPPPAR-LNSFVATRN 147

  Fly   360 QQQQQDYQHPSRHHTNQSTLSTQSSLLELASPTEKPRSLMGQSHSMGDLQQKNPHQNPMLGRSAG 424
            .:..:..|.|...|.:.|||. |:|..|:.|......|.:......||.....|:...:|.||:.
Zfish   148 LENLRTRQSPEGQHADISTLQ-QASSPEVYSVQADTLSQLNDHLDHGDKMLDAPNHTGILNRSSL 211

  Fly   425 QQHKSSISVTISSSEAVVTIAPQPPAGKPSKLQLSL-GKSEALSCSTPNMGEQSPTNSIDSYRSN 488
            |                 |..|.|       ||.|. |.||.                  ..:.:
Zfish   212 Q-----------------TCQPDP-------LQRSRNGHSET------------------QRKRS 234

  Fly   489 HRLFPVSTYTEPVHSNTSQ----------YVQHPKPQ--FSSGLHKSAKLPVITPAGATVQPT-- 539
            |     |.|..||..:.|.          .:|| |.|  |.:|:.||::..:....||.::.:  
Zfish   235 H-----SAYCAPVSEHQSSCNMPQNMISGSIQH-KGQFYFVTGVFKSSEPSIEQDDGADLETSTE 293

  Fly   540 WHSVAERINDFERSQLGEPP--KFAYLEPTKTHRLSNPALKALQKNAV---QSYVERQQQQQKEE 599
            |...|:|    .|....:.|  |..:.|..| ..:.|..::.|...|.   :...|..:.|:...
Zfish   294 WFYKAQR----RRQSCPDGPSGKLFFQEEHK-FSIQNEDVEHLNDQAFFRPEQTCESVEDQKAMS 353

  Fly   600 QQLLRPHSQSYQA--CHVERKSLPNNLSPIMV--------------------GLPTGSNSASTRD 642
            ::..|.||.|:..  |..|..|....::|.::                    .:|:...|..|  
Zfish   354 RETGRHHSTSHPIFYCGPEDSSAGVIMTPALIKEDHLKIEERLARVSRWPQLDIPSDKISKET-- 416

  Fly   643 CSSPTPPPPPRRSGSLLPNLLRRSSSASDYAEFRELHQAQGQVKGPSIRNISNAEKISFNDCGMP 707
                ||         ||.:|...:.::....:|:..:....::|.|              :|...
Zfish   417 ----TP---------LLYHLTGANRASHADKQFKNNNDTGVELKNP--------------ECVKD 454

  Fly   708 PPPPPPRGRLAVPTRRTSSATEYAP---------------------MRDKLLLQQAAALAHQ--- 748
            .|.       ||...:||.::|.:.                     .::||...|:..|...   
Zfish   455 EPK-------AVYDGQTSPSSEKSKEEQPNEFFYQCATLDDSYKKYYKEKLKDVQSKVLRETSFK 512

  Fly   749 --------QHHPQQHRHAQPPHVP--PERPPKHPNLRV-PSPELPPPPQSELDISYTFDEPLPPP 802
                    .|..:|....:...||  |......|||.: |:|:.|.....|........|.:.|.
Zfish   513 RRDLQLSLSHRVKQWTDKKLSVVPSTPSTLDLRPNLDIHPTPQKPQDTDQENTGQEIEKETVKPK 577

  Fly   803 PPPEVLQPRPPPSPNRRNCFAGASTRRTTYEAPPPTAIVAAKVPPLVPKKPTSLQHKHLANGGGG 867
            .|..:.||:.|...:|:.  ..|..::.::..|.....:|        ..|:....:.|.|...|
Zfish   578 KPQNIAQPQVPRVGSRKR--LTADQKKLSHSEPEKLHQLA--------DGPSHTTCRSLGNESEG 632

  Fly   868 SRKRPHH---ATPQPILENVASPVAPPPPLLPRARSTAHDNVIASNLESNQQKRSNSKASYLPRQ 929
            ......|   |:.:.:.|.             |.|:.:..|...|:|:..|.|   :..:|:.|:
Zfish   633 LLSEADHGLVASRRKMFET-------------RGRAMSASNFSKSSLKHLQHK---ALVAYMERK 681

  Fly   930 SLEKLNNTDPDHGI------YKLTLTSNEDLVA-HTKPSYGVTGKLPNNLPDVLPLGVKLHQQPK 987
            :.:|:  .:|.|.|      :..|:....:.:| |..                   |.|..|:| 
Zfish   682 TGQKV--AEPQHPIPQEPTHWDYTVEGQSERIAQHNS-------------------GSKKLQRP- 724

  Fly   988 LQPGSPNGDANVTLRYGSNNNLTGNSPTVAPPPYYGGGQRYSTPVLGQGYGKSSKPVTPQQ--YT 1050
            |..|......:.:::|  :..:|..|...:....:    |..||..|:.....|....|:|  ..
Zfish   725 LSAGQILDSVSSSVKY--SQFITDQSSVHSRQSSW----REKTPATGKSASVESLLDQPEQPKLP 783

  Fly  1051 RSQSYDVKHTSAVTMPTMSQSHVD---------LKQAAHDLE-TTLEEVLPTATPTPT------- 1098
            ||:|..:.|...:      |.|.|         :..|...:| ..:.:..|.:.|...       
Zfish   784 RSRSTSIPHAFQI------QKHPDELSTINNKAMSSAQRKVEGKAIRQSYPASVPDERRFQVRAS 842

  Fly  1099 ---------PTPTPTPPRLSPASSHSDCSLS------------------TSSLECT----INPIA 1132
                     .:....|..||.:|...|..|.                  .||.|.|    .||..
Zfish   843 RGKSMEELGASAVTKPAALSKSSEQLDQHLGHKRTVSFLAEGRRAHRNIHSSTENTQAGPENPWL 907

  Fly  1133 TPIPKPE-AHIFRAEVISTTLNTN---PLTTPPKPAMNRQESLRENIEKITQL-------QSVLM 1186
            |...|.| ::.....|:|.|.:.:   .:.:.|.| ::....::.:|.|....       .||:.
Zfish   908 TSTIKHESSNDDERHVVSHTTHKHVDYSIVSVPSP-LSEHGGIKLDIRKEQDCFPQDENEASVVS 971

  Fly  1187 SAHLCDASLLGGYTT--PLITSPTASFANEPLMTPPL-------PPSPPPPLEPEEEE------- 1235
            :.   :.||..|.||  .|..|.......||.:.|..       |.:|||....|..|       
Zfish   972 NE---EVSLSHGVTTDPSLWISAIEISEEEPKICPSTETTTFGEPQNPPPASSAENHEPTSIPNH 1033

  Fly  1236 -----------EQEENDVHDKQPEIEELQLMQRSELVLMVNPKPSTTDMACQTDELEDRDTDLEA 1289
                       |.||:||...:.:                 ||.:|.....:.:.|...    ..
Zfish  1034 AEIQEVLESVGEPEEDDVKSDEDD-----------------PKNNTEGNLLEWEVLVQE----VV 1077

  Fly  1290 AREEHQTRTTLQPRQRQPIELDYEQMSRELVKLLPPGDKIADILTPKICKPTSQYVSNLYNPDVP 1354
            :.::...||......|:...:..||:..|...|:....|             :::...|:||:..
Zfish  1078 SADQSLARTLFPVANRKTALMLMEQLLSEDTLLMEEHYK-------------NKHQQMLHNPEKD 1129

  Fly  1355 LRLAKRDVGTSTLMRMKSITSSAEIRVVSVELQLAEPSEEPTNLIKQKMDELIKHLNQKIVSLKR 1419
            ...::..||......:.|:..::.|: ...::|.....:     |..|..:|:.|:..::.||:.
Zfish  1130 THCSEMPVGDDLPKHLSSVNKNSAIK-YQKDVQCNTEMD-----IVSKKKQLMAHIKHQLKSLED 1188

  Fly  1420 EQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLET 1484
            .:..:..|..||...|:.:.|.:.....|:|..::...:..:..:.||||.||.|||:.:::|.|
Zfish  1189 VRSAVQAEEKANGARGEAVQALVGLCCIPAELERYTQFIGDLERVLSLLLCLSARLARVQNALST 1253

  Fly  1485 -----RQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKA 1544
                 ..:|:.:|:|:..||.:|.::|:.||.:::||...::|:|.|.|:.....:|..||..||
Zfish  1254 VDDSIDAEEKQSLDSRYRLLCKQRDDAKDLKDNLDRRERLVSGILCKQLTDTQMQEYRRFIQTKA 1318

  Fly  1545 KLIADARDLAVRIKGSEEQLSSL 1567
            .|:...:||..:.:..||||.:|
Zfish  1319 SLLIRLKDLDEKQRLGEEQLEAL 1341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShrmNP_001097307.1 ASD2 1318..1570 CDD:285850 63/255 (25%)
shroom1XP_687790.6 ASD1 482..650 CDD:285851 32/177 (18%)
ASD2 1072..1344 CDD:285850 69/293 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592778
Domainoid 1 1.000 112 1.000 Domainoid score I6135
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004714
OrthoInspector 1 1.000 - - otm25110
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15012
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.030

Return to query results.
Submit another query.