DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ih and SKOR

DIOPT Version :9

Sequence 1:NP_001033948.1 Gene:Ih / 36589 FlyBaseID:FBgn0263397 Length:1327 Species:Drosophila melanogaster
Sequence 2:NP_186934.1 Gene:SKOR / 821052 AraportID:AT3G02850 Length:828 Species:Arabidopsis thaliana


Alignment Length:592 Identity:132/592 - (22%)
Similarity:245/592 - (41%) Gaps:113/592 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   713 FQPTDNRLAMKLFGSR--KALVKERIRQKTSGHWVIHPCSSFRFYWDLCMLLLLVANLIILPVAI 775
            |.|..|.|.:...|..  |..|...||..:.|. ::||.:.:...|.:.:|:..:.:....|:..
plant    41 FNPLTNFLGLDFAGGSGGKFTVINGIRDISRGS-IVHPDNRWYKAWTMFILIWALYSSFFTPLEF 104

  Fly   776 SFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLIS 840
            .||. .|.......:......||:|||:.|... .:.....::|.....||..||::.|.:||::
plant   105 GFFR-GLPENLFILDIAGQIAFLVDIVLTFFVA-YRDSRTYRMIYKRSSIALRYLKSTFIIDLLA 167

  Fly   841 SIPLDYIFLIFNQIMKLQDFSDSFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYI 905
            .:|.|.|:..                  ||....:    :.|.|:||.|:.|::.:         
plant   168 CMPWDIIYKA------------------AGEKEEV----RYLLLIRLYRVHRVILF--------- 201

  Fly   906 LQNLQKKSADRRGRMNRKDKDGLTKSNLILKFLNMASVFMRIFNLICMMLLIGHWSGCL-QFLVP 969
                          .::.:||           :.:..:|.||..||.:.|...|.:.|: .:|..
plant   202 --------------FHKMEKD-----------IRINYLFTRIVKLIFVELYCTHTAACIFYYLAT 241

  Fly   970 ML----QGFPSNSWV--------SINELQESYWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMW 1022
            .|    :|:   :|:        |.::.:|.....:|:.:::.|:..|..:|||.....::.:|.
plant   242 TLPASQEGY---TWIGSLKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMI 303

  Fly  1023 LTML----SMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPRDMRQRITEY 1083
            ..|:    .||.|    |..:|:.|.||.. .|...::|:|:..:..||...||.|::|.:||.:
plant   304 FAMVYISFDMILG----AYLIGNMTALIVK-GSKTERFRDKMADIMRYMNRNKLGRNIRGQITGH 363

  Fly  1084 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLKYEVFQPG 1148
            ...:|:.. :.|..:|.::...:|..:........:..||.|....|.|::.:|.:|..|.|.||
plant   364 LRLQYESS-YTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

  Fly  1149 DIIIKEGTIGTKMYFIQEGVVDIV----MANGEVATSLSDGSYFGEICLLTNARRVASVRAETYC 1209
            ::|:::|::..::||:..||::.:    ..:.|:...|.....||||.:|.|..:..:||....|
plant   428 EVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELC 492

  Fly  1210 NLFSLSVDHFNCVL-----DQYPLMRKTMETVAAERLNKIGKNPNIMHQKDEQLSNPESNTITAV 1269
            .:..|....|..:|     |...::...:|          ||..|:      ::...||: ||..
plant   493 RILRLDKQSFMNILEIFFHDGRRILNNLLE----------GKESNV------RIKQLESD-ITFH 540

  Fly  1270 VNALAAE 1276
            ::...||
plant   541 ISKQEAE 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IhNP_001033948.1 Ion_trans_N 709..751 CDD:285597 12/39 (31%)
Ion_trans 771..1054 CDD:278921 62/299 (21%)
Crp 1118..>1241 CDD:223736 33/131 (25%)
CAP_ED 1124..1233 CDD:237999 30/117 (26%)
SKORNP_186934.1 PLN03192 70..827 CDD:215625 123/563 (22%)
ANK repeat 580..611 CDD:293786
ANK repeat 613..644 CDD:293786
ANK repeat 677..708 CDD:293786
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 45 1.000 Domainoid score I4624
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H134619
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm987
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.810

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