DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ih and Kcnh4

DIOPT Version :9

Sequence 1:NP_001033948.1 Gene:Ih / 36589 FlyBaseID:FBgn0263397 Length:1327 Species:Drosophila melanogaster
Sequence 2:NP_001074663.1 Gene:Kcnh4 / 380728 MGIID:2156184 Length:1018 Species:Mus musculus


Alignment Length:640 Identity:147/640 - (22%)
Similarity:256/640 - (40%) Gaps:171/640 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   688 EPMPNIPIVSEKVSANFLKSQLQSWFQPTDNRLAMKLFGSRKALVKERIRQKTSGHWVIHPCSSF 752
            ||.|::|  ..||::                     :.|||..|:          |:.|.     
Mouse   199 EPKPSVP--EYKVAS---------------------VGGSRCLLL----------HYSIP----- 225

  Fly   753 RFYWDLCMLLLLVANLIILPVAISFFNDD----LSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQD 813
            :..||..:||......:.:|..:.|..||    .|...:..:...:.:|::||::||||..:.|.
Mouse   226 KAVWDGLILLATFYVAVTVPYNVCFAGDDDTPITSRHTLVSDIAVEMLFILDIILNFRTTYVSQS 290

  Fly   814 NAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQIMKLQDFSDSFQILHAGRALRILRL 878
            .  |||..|:.|..|||.||||:|||:::|.|.:: :||                    :.:..|
Mouse   291 G--QVISAPRSIGLHYLATWFFVDLIAALPFDLLY-VFN--------------------ITVTSL 332

  Fly   879 AKLLSLVRLLRLSRLVRYVSQWEEVYILQNLQKKSADRRGRMNRKDKDGLTKSNLILKFLNMASV 943
            ..||..||||||.||            ||.|::.|               ..|.::|..|     
Mouse   333 VHLLKTVRLLRLLRL------------LQKLERYS---------------QCSAVVLTLL----- 365

  Fly   944 FMRIFNLICMMLLIGHWSGCLQFLV---------PMLQGFPSNSWVSI--NELQESY-------- 989
             |.:|      .|:.||..|:.:::         |:|...   .|:..  ..|:|.|        
Mouse   366 -MSVF------ALLAHWMACVWYVIGRREMEANDPLLWDI---GWLHELGKRLEEPYVNGSAGGP 420

  Fly   990 -WLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSR 1053
             ....|..||:..:|.:..:|:|.....:..:...::.:|:.||..:|:..|:.|.:||.:.|.|
Mouse   421 SRRSAYIAALYFTLSSLTSVGFGNVCANTDAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRR 485

  Fly  1054 RQYREKVKQVEEYMAYRKLPRDMRQRITEYFEHRYQ-GKFFDEELILGELSEKLREDVINYNCRS 1117
            ..|..::|.:::::...:|||.::||:.|||:..:. ....|...:|.:..::||.|:..:..|.
Mouse   486 SLYHSRMKDLKDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNRE 550

  Fly  1118 LVASVPFFANADSNFVSDVVTKLKYEVFQPGDIIIKEGTIGTKMYFIQEGVVDIVMANGEVA--- 1179
            :: .:|.|..|....:..:...:|.....||:.:::.|......|::..|.::::..|..:|   
Mouse   551 IL-QLPLFGAASRGCLRALSLHIKTSFCAPGEYLLRRGDALQAHYYVCSGSLEVLRDNMVLAILG 614

  Fly  1180 -----------TSLSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNCVLDQYPLMRKTM 1233
                       .....||..|..|:|..:   |.|:|.|||.|..||......||..||      
Mouse   615 KGDLIGADIPELGQEPGSGAGPSCVLKTS---ADVKALTYCGLQQLSSRGLAEVLRLYP------ 670

  Fly  1234 ETVAAER-------------------LNKIGKNPNIMHQKDEQLSNPESNTITAV 1269
            |..||.|                   |.:..::|.:...:.:.|.:....|:.::
Mouse   671 EYAAAFRAGLPRDLTFNLRQGSENNGLGRFSRSPRLSQARSDTLGSSSDKTLPSI 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IhNP_001033948.1 Ion_trans_N 709..751 CDD:285597 6/41 (15%)
Ion_trans 771..1054 CDD:278921 77/306 (25%)
Crp 1118..>1241 CDD:223736 33/155 (21%)
CAP_ED 1124..1233 CDD:237999 28/122 (23%)
Kcnh4NP_001074663.1 PAS_9 29..135 CDD:290162
PAS 42..133 CDD:238075
Ion_trans 244..486 CDD:278921 77/306 (25%)
Ion_trans_2 <426..480 CDD:285168 13/53 (25%)
CAP_ED 556..676 CDD:237999 30/128 (23%)
bZIP <864..902 CDD:304365
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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