DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ih and Kcnh3

DIOPT Version :9

Sequence 1:NP_001033948.1 Gene:Ih / 36589 FlyBaseID:FBgn0263397 Length:1327 Species:Drosophila melanogaster
Sequence 2:NP_058804.1 Gene:Kcnh3 / 27150 RGDID:71070 Length:1087 Species:Rattus norvegicus


Alignment Length:704 Identity:160/704 - (22%)
Similarity:270/704 - (38%) Gaps:189/704 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   705 LKSQLQSWFQPT-DNRLAMKLFGSRKALVKERIRQKTSGHWVIHPCSSFRFYWDLCMLL--LLVA 766
            |...||.  ||. .::|...:||.:..|.:.::.......:::..|.:.|..||..:||  |.||
  Rat   177 LSGHLQK--QPKGKHKLNKGVFGEKPNLPEYKVAAIRKSPFILLHCGALRATWDGFILLATLYVA 239

  Fly   767 NLIILPVAISFFNDDLSTRWIAFNC--LSDTIFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHY 829
            ..:...|.:|...:..:.|.....|  ..:.:|::|||:||||..:.:..  ||:..||.|..||
  Rat   240 VTVPYSVCVSTAREPSAARGPPSVCDLAVEVLFILDIVLNFRTTFVSKSG--QVVFAPKSICLHY 302

  Fly   830 LRTWFFLDLISSIPLDYIFLIFNQIMKLQDFSDSFQILHAGRALRILRLAKLLSLVRLLRLSRLV 894
            :.|||.||:|:::|                    |.:|||.: :.:...|.||..||||||.||:
  Rat   303 VTTWFLLDVIAALP--------------------FDLLHAFK-VNVYVGAHLLKTVRLLRLLRLL 346

  Fly   895 ----RYVSQWEEVYILQNLQKKSADRRGRMNRKDKDGLTKSNLILKFLNMASVFMRIFNLICMML 955
                || ||:..|.:                                    ::.|.:|      .
  Rat   347 PRLDRY-SQYSAVVL------------------------------------TLLMAVF------A 368

  Fly   956 LIGHWSGCLQFLVPMLQGFPSNSWVSINELQESYWLEQ--------------------------- 993
            |:.||..|:.|.:...:...|.|     ||.|..||::                           
  Rat   369 LLAHWVACVWFYIGQQEIENSES-----ELPEIGWLQELARRLETPYYLVSRSPDGGNSSGQSEN 428

  Fly   994 --------------------------YSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMISGA 1032
                                      |..:|:.|:|.:..:|:|.....:.|:...::.:|:.||
  Rat   429 CSSSGGGSEANGTGLELLGGPSLRSAYITSLYFALSSLTSVGFGNVSANTDTEKIFSICTMLIGA 493

  Fly  1033 TCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPRDMRQRITEYFEHRYQ-GKFFDEE 1096
            ..:|:..|:.|.:||.:.:.|..|..:.:.:.:|:...::|:.::||:.|||:..:. ....|..
  Rat   494 LMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLEYFQATWAVNNGIDTT 558

  Fly  1097 LILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLKYEVFQPGDIIIKEGTIGTKM 1161
            .:|..|.::||.| |..:....|..:|.|..|....:..:...|:.....||:.:|.:|.....:
  Rat   559 ELLQSLPDELRAD-IAMHLHKEVLQLPLFEAASRGCLRALSLALRPAFCTPGEYLIHQGDALQAL 622

  Fly  1162 YFIQEGVVDIVMANGEVATSLSDGSYFGEICLLTNARRV----ASVRAETYCNLFSLSVDHFNCV 1222
            ||:..|.:: |:..|.|...|..|...|  |.|....:|    |.|:..|||.|..|.:...:..
  Rat   623 YFVCSGSME-VLKGGTVLAILGKGDLIG--CELPQREQVVKANADVKGLTYCVLQCLQLAGLHES 684

  Fly  1223 LDQYPLMRKTMET--------------VAAE--RLNKIGKNPNIMHQKDEQLSNPESNTITAVVN 1271
            |..||........              |:||  ..:..|.|..:...::::....:.:||:    
  Rat   685 LALYPEFAPRFSRGLRGELSYNLGAGGVSAEVDTSSLSGDNTLMSTLEEKETDGEQGHTIS---- 745

  Fly  1272 ALAAEADD---------CKDDDMDLKENLLHGSESSIAEPVQTIREGLPRPRSG 1316
              .|.||:         |              :.||.|..:.:.|...||||.|
  Rat   746 --PAPADEPSSPLLSPGC--------------TSSSSAAKLLSPRRTAPRPRLG 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IhNP_001033948.1 Ion_trans_N 709..751 CDD:285597 9/42 (21%)
Ion_trans 771..1054 CDD:278921 75/341 (22%)
Crp 1118..>1241 CDD:223736 34/142 (24%)
CAP_ED 1124..1233 CDD:237999 29/112 (26%)
Kcnh3NP_058804.1 PAS 42..133 CDD:238075
PAS_3 42..123 CDD:285623
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 137..161
Ion_trans 246..514 CDD:278921 75/338 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..436 0/19 (0%)
Ion_trans_2 <455..509 CDD:285168 14/53 (26%)
Selectivity filter. /evidence=ECO:0000250 468..473 1/4 (25%)
CAP_ED 585..695 CDD:237999 29/112 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 733..813 15/71 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 975..1061
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338734
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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