DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ih and Hcn1

DIOPT Version :9

Sequence 1:NP_001033948.1 Gene:Ih / 36589 FlyBaseID:FBgn0263397 Length:1327 Species:Drosophila melanogaster
Sequence 2:NP_034538.2 Gene:Hcn1 / 15165 MGIID:1096392 Length:910 Species:Mus musculus


Alignment Length:573 Identity:315/573 - (54%)
Similarity:424/573 - (73%) Gaps:45/573 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   704 FLKSQLQSWFQPTDNRLAMKLFGSRKALVKERIRQKTSGHWVIHPCSSFRFYWDLCMLLLLVANL 768
            |::.|..|..||..|:.::::|||:||:.||:.|.||:|.|:|||.|.|||||||.||:::|.||
Mouse    82 FMQRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAGFWIIHPYSDFRFYWDLIMLIMMVGNL 146

  Fly   769 IILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTW 833
            :|:||.|:||.:..:|.||.||..|||:||:|:::|||||.:.:|::| :|||||:|..:||::|
Mouse   147 VIIPVGITFFTEQTTTPWIIFNVASDTVFLLDLIMNFRTGTVNEDSSE-IILDPKVIKMNYLKSW 210

  Fly   834 FFLDLISSIPLDYIFLIFNQIMKLQDFSDSFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVS 898
            |.:|.|||||:||||||..:.|      || ::....|||||:|..|:|||:||||||||:||:.
Mouse   211 FVVDFISSIPVDYIFLIVEKGM------DS-EVYKTARALRIVRFTKILSLLRLLRLSRLIRYIH 268

  Fly   899 QWEEVYILQNLQKKSADRRGRMNRKDKDGLTKSNLILKFLNMASVFMRIFNLICMMLLIGHWSGC 963
            ||||::.:.                              .::||..:||||||.||||:.||.||
Mouse   269 QWEEIFHMT------------------------------YDLASAVVRIFNLIGMMLLLCHWDGC 303

  Fly   964 LQFLVPMLQGFPSNSWVSINELQESYWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSM 1028
            ||||||:||.||.:.|||:||:....|.:|||:|||||||||||||||...|.|::|:|:|||||
Mouse   304 LQFLVPLLQDFPPDCWVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSM 368

  Fly  1029 ISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPRDMRQRITEYFEHRYQGKFF 1093
            |.||||||:|:||||.||||||||||||:||.||||:||::.|||.||||:|.:|:|||||||.|
Mouse   369 IVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIF 433

  Fly  1094 DEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLKYEVFQPGDIIIKEGTIG 1158
            |||.||.||::.|||:::|:|||.|||::|.|||||.|||:.:::||::|||||||.||:||.:|
Mouse   434 DEENILSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVG 498

  Fly  1159 TKMYFIQEGVVDIVMANGEVATSLSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNCVL 1223
            .||||||.||..::..:.: ...|:||||||||||||..||.|||||:|||.|:|||||:||.||
Mouse   499 KKMYFIQHGVAGVITKSSK-EMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVL 562

  Fly  1224 DQYPLMRKTMETVAAERLNKIGKNPNIMHQKDEQ------LSNPESNTITAVV 1270
            ::||:||:..||||.:||::|||..:|:.||.::      .:|.|:..:..:|
Mouse   563 EEYPMMRRAFETVAIDRLDRIGKKNSILLQKFQKDLNTGVFNNQENEILKQIV 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IhNP_001033948.1 Ion_trans_N 709..751 CDD:285597 19/41 (46%)
Ion_trans 771..1054 CDD:278921 151/282 (54%)
Crp 1118..>1241 CDD:223736 75/122 (61%)
CAP_ED 1124..1233 CDD:237999 67/108 (62%)
Hcn1NP_034538.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..75
Ion_trans_N 87..129 CDD:285597 19/41 (46%)
Ion_trans 149..394 CDD:278921 151/282 (54%)
Selectivity filter. /evidence=ECO:0000305|PubMed:12089064 347..351 3/3 (100%)
Crp 458..>593 CDD:223736 81/135 (60%)
CAP_ED 464..572 CDD:237999 67/108 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 634..681
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 771..791
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 865..910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 176 1.000 Domainoid score I3586
eggNOG 1 0.900 - - E1_KOG0498
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000897
OrthoInspector 1 1.000 - - otm44108
orthoMCL 1 0.900 - - OOG6_101339
Panther 1 1.100 - - O PTHR45689
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X717
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.810

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