DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ih and cngb1

DIOPT Version :9

Sequence 1:NP_001033948.1 Gene:Ih / 36589 FlyBaseID:FBgn0263397 Length:1327 Species:Drosophila melanogaster
Sequence 2:XP_031757189.1 Gene:cngb1 / 100496200 XenbaseID:XB-GENE-980342 Length:1922 Species:Xenopus tropicalis


Alignment Length:1439 Identity:279/1439 - (19%)
Similarity:527/1439 - (36%) Gaps:327/1439 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NDQRASRDNLCPDNQQQQQQRHSHSHQHL-VRQSLVSLSNGQPAASAAPDSVSLLRAGDDQQQHP 84
            |.:....||  .|...|.:.:...:|..| :.::::.....|....:....::.::..::||..|
 Frog   536 NARDVKTDN--EDGHWQDKAKGKVAHNRLSLEETIIIKQTQQMIIKSQSLELTQIQPSEEQQNKP 598

  Fly    85 QQ-PHLQQQQQQQQHLQQQQ-QRHRSSSSRLSTSGISKQNSSDSRSGL-RILDSSHSPVSCGTQS 146
            .. ..:...:::.|.|::.| ...|.....:.|         :||..| |.|....|....|.:.
 Frog   599 DTVADMADTKERAQELKKTQCLNERDPQPEVET---------ESRMELQRQLTEDMSFQFYGCED 654

  Fly   147 VSSTGGQSALYDACHEYS--RSLSAAAAEGAASLLKSHYSDQQLAQTEPD-----PEPDP----- 199
            :     |.||:|..::..  :..|....:....|.::.|...::...|.|     .|.||     
 Frog   655 I-----QQALWDEQNQQEDIKKQSFCEIQSEKELKEAQYDIDKMPTAEEDLHKTAEETDPREKIN 714

  Fly   200 --------------ERDRDRDRDRDRDR---------ERERRHLTNLNLNLSSEYD---YSGSDK 238
                          |.:...||..::.:         |:|:|.| ::::...::.|   :..:::
 Frog   715 GQLMKDTILSRENIEHNDSGDRFDEKIKKIDIDIQPIEKEQRQL-SIDMKTDAQLDEERHVQTEE 778

  Fly   239 QQLVNETYIFKCIANSPSFLRTNKIKEQSKKLRNLSLKTRTAKKKGQIISKSNAVSDNS--LHPG 301
            :....|..:.:...........::|:.:.::.:.....:...:||.:   ..|.:|.::  ::|.
 Frog   779 RHTQTEDPVCQTAEERQLSYDEDQIQTEERETQTDERFSPPVQKKSE---HENVISQHAELVYPD 840

  Fly   302 -------DKYLNLY------LVEKKHSLQPQVASTSSSINTTHPQASSAPASSSSTCTKAPQLPA 353
                   ::...:|      .:|.||.        :|....|..|:......:..   |..||..
 Frog   841 KDAPYKKNECQEIYEVPQHNFIESKHE--------ASESQLTEQQSQDQEFQNDK---KEAQLEE 894

  Fly   354 LSAVAARQQQLLLNGSLKGKGQSQSQGQSRQTLPGHRASVRSESGSGSSHTI-PATGKSPPVPHS 417
            ::....|..|......|..|.::|::.:.:..  ..:..::||........| |..|:.....|.
 Frog   895 VNQNLERAMQNEKKMCLSEKTENQTEEEDKSN--EEKKYIQSEEEKNIEKEIFPKPGEQSVTEHV 957

  Fly   418 LAAKISSSASGSKNCNL-LSASSNSCHKLNAHAQGSGAGSGSGSGSGSGPPGHSHY-------AA 474
            .......:...|....: .|...:|..:.....:...............|...|:|       .|
 Frog   958 NQTDEERTVQSSVEIQIHYSQKRDSLEQQKIQIEEEVMNEVLRKDQNIIPEIDSNYDRNHEKEVA 1022

  Fly   475 ASPKSSVSSN-----------------GHLNKYC---------------LTDLTR---RKAE--- 501
            .:|: ::||:                 .|:...|               ||.|.:   :|.|   
 Frog  1023 LTPE-AISSDQVKKELEDKDLVPVEEASHIETECSHEVMQYGDLTCDSALTTLLKSDDQKEEKGV 1086

  Fly   502 -------FNRQLSAPTDYTHHSSS---NGSQQEGSSEANEGHEPVGE-------STITVASAGV- 548
                   .|.:||..|:.....:.   :..|.|...|....||.:.|       :::.||:..| 
 Frog  1087 EKEVLESENERLSWITEEDEDETELQVSYYQSESEEEIKVSHEVILEAPPEYLDTSVVVATQAVE 1151

  Fly   549 ----------------SYPHPYSYPYHYAHHASSATAPANLKASLQLHSFGSHHPCPYPARPTST 597
                            |.|.|...|:.:...:.......::..:|:...|....|.|...|..:.
 Frog  1152 ETNYLKQFPVQIAGTLSLPEPDGGPFMHPAVSVEDVDSGSITDALEHEDFVRPPPSPCKHRTLTV 1216

  Fly   598 SCTN--SFNRRHIRRHKGKLGDRLLSGDSEESVRCSYCSVLNVNDNDLRISFENTCTDSLVTAFD 660
            ..|:  :.:|:..:..:..:.:...:...:|.|.....|.::   :...|..|.  ...||..|.
 Frog  1217 PVTSLPAKSRKRTQSQEDIMEEMSDAAPEDEEVMERSASAIS---HSSAIITER--LQELVRMFK 1276

  Fly   661 D------EALLICDQGTEMVHFDDVSLYGTPKEE-----PMPNIPIVSEKVSAN----------- 703
            |      |.|:..:..:|     |.|...:|.::     |.|..|...:||...           
 Frog  1277 DRTERVKEKLIDPELSSE-----DESPSASPSKKSAPPPPPPPPPAEEKKVEVEAQAEEEHYCEM 1336

  Fly   704 -FLKSQLQSWFQPTDNRLAMKLFGSRKALVKERIRQKTSGHWVIHPCSSFRF-YWDLCMLLLLVA 766
             ..|.:.:.|   .|..|.:|...|                  |.|.::..: .|...::|....
 Frog  1337 LCCKFKTRPW---RDRLLKLKFPSS------------------IDPLTNVMYVLWLFFVVLAWNW 1380

  Fly   767 NLIILPVAISFFNDDLST--RWIAFNCLSDTIFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHY 829
            |..::||..:|.....|.  .|:..:.|.|.|:|:||.| |::. :|......:|.:.|.:.:||
 Frog  1381 NCWLIPVRWAFPYQTPSNIHYWLLMDYLCDLIYLLDITV-FQSR-LQFVRGGDIITNKKDMREHY 1443

  Fly   830 LRT-WFFLDLISSIPLDYIFLIFNQIMKLQDFSDSFQILHAGRALRILRLAKLLSLVRLLRLSRL 893
            .:: .|.:||||.:|||.::|.|                               .:..||||.|:
 Frog  1444 FKSERFKMDLISLLPLDLLYLKF-------------------------------GVKSLLRLPRI 1477

  Fly   894 VRYVSQWEEVYILQNLQKKSADRRGRMNRKDKDGLTKSNLILKFLNMASVFMRIFNLICMMLLIG 958
            ::|::.:|                            .:|.:...|:.|.:: |:......:|...
 Frog  1478 LKYMAFFE----------------------------FNNRLEAILSKAYIY-RVIRTTAYLLYCL 1513

  Fly   959 HWSGCLQFLVPMLQGFPSNSWVSINELQESYWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMWL 1023
            |.:.||.:.....:|..|..|| .:.:..|| :..|.|    |:..::.|| |...|.:|.::|.
 Frog  1514 HMNACLYYWASDYEGLSSTPWV-FDGVGNSY-IRCYYW----AVKTLITIG-GLPDPDTLFELWF 1571

  Fly  1024 TMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPRDMRQRITEYFEHRY 1088
            .:|:...|...:::.:|...:::.:..:.:..||..:....:||...|:||.::.|:..::|:.:
 Frog  1572 QLLNYFMGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTIKYMNCYKIPRSVQNRVKMWYEYTW 1636

  Fly  1089 QGK-FFDEELILGELSEKLREDV---INYNCRSLVASVPFFANADSNFVSDVVTKLKYEVFQPGD 1149
            |.: ..||..::.:|.:|:|.|:   :||   |:|:.|..|...|...:.|::.:|:..|:.|||
 Frog  1637 QSQGMLDESELMVQLPDKMRLDLAIDVNY---SIVSKVILFQGCDRQMIYDMLKRLRSVVYLPGD 1698

  Fly  1150 IIIKEGTIGTKMYFIQEGVVDIVMA-NGE-VATSLSDGSYFGEICLLT---NARRVASVRAETYC 1209
            .:.|:|.||.:||.|:.|.|.::.. :|: |..||..||.||||.||.   ..||.|:|.|..:.
 Frog  1699 YVCKKGEIGREMYIIKAGQVQVLGGPDGKTVLVSLKAGSVFGEISLLAVGGGNRRTANVVAHGFT 1763

  Fly  1210 NLFSLSVDHFNCVLDQYPLMRKTMETVAAERLNKIGKNPNIMHQKDE--------QLSNPESNTI 1266
            |||.|.....|.:|..||..:|.:...|.:.|....|      .|||        .:..|...|.
 Frog  1764 NLFILDKKDLNEILLHYPESQKLLRKKAKKMLKNSSK------PKDEPGQEKGFLHIIPPRPETP 1822

  Fly  1267 TAVVNALAA 1275
            ..:..|:||
 Frog  1823 KLLKAAIAA 1831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IhNP_001033948.1 Ion_trans_N 709..751 CDD:285597 7/41 (17%)
Ion_trans 771..1054 CDD:278921 61/285 (21%)
Crp 1118..>1241 CDD:223736 46/127 (36%)
CAP_ED 1124..1233 CDD:237999 43/113 (38%)
cngb1XP_031757189.1 PTZ00121 <507..1098 CDD:173412 89/595 (15%)
PLN03192 1359..>1745 CDD:215625 114/457 (25%)
CAP_ED 1673..1782 CDD:237999 41/108 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1073751at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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