DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and RLP40

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_566757.2 Gene:RLP40 / 822091 AraportID:AT3G24982 Length:915 Species:Arabidopsis thaliana


Alignment Length:908 Identity:217/908 - (23%)
Similarity:356/908 - (39%) Gaps:245/908 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 NNTLEQLHLLRTNLSHVGLLGFGILGKAKELVIDGHAFQQLPKDLFAGQEIANSLGIIR------ 180
            |::|.|.|.||:.|                          ||.:.|....|::..|::.      
plant   122 NSSLFQFHHLRSLL--------------------------LPHNNFTSSSISSKFGMLNNLEVLS 160

  Fly   181 -VTNGNLSDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKL------- 237
             .::|.|:.:|. :|..|..|..|.|..|.|.. ..:..:|||:|.|||:|:|....:       
plant   161 LSSSGFLAQVPF-SFSNLSMLSALVLSNNDLTG-SLSFARNLRKLRVLDVSYNHFSGILNPNSSL 223

  Fly   238 -EAQHIADLTKLGWCNVSHNALSELSRG-TFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLF 300
             |..||.      :.|:.:|..:..|.. .|...:.|:||.:|.|........:...:..|..|:
plant   224 FELHHII------YLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELY 282

  Fly   301 LSDNVLTDIGRGTFGSIARIGTIDLARNRLK-------------KIEFQMFTQMNYVELLDLAEN 352
            |..|..|             |::.|.:|..|             .|...:|| |.::..|.|..|
plant   283 LPLNHFT-------------GSLPLVQNLTKLSILHLFGNHFSGTIPSSLFT-MPFLSYLSLKGN 333

  Fly   353 NIT-KIE-KNSFKDIYQAIINVSHNALELIETAAFENCVNITVLDLSHNRLANFSRRSFDETTFA 415
            |:. .|| .||........:::..|..|..........:|:..||||.               ..
plant   334 NLNGSIEVPNSSSSSRLESLHLGENHFEGKILEPISKLINLKELDLSF---------------LN 383

  Fly   416 TYFQLSYNNLTNLAQIPIQNMTGLKVLNASYNSITEIPKNCFPKLYELHTIDVSHNNISSIFNGV 480
            |.:.:..:..::|..:.:.:::|..:..||....:.||..       |..:.:.|.:||. |..|
plant   384 TSYPIDLSLFSSLKSLLLLDLSGDWISKASLTLDSYIPST-------LEVLRLEHCDISD-FPNV 440

  Fly   481 FQTLFSLRSIDLSHNSMREIKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKL--TSLRQLYLNNN 543
            |:||.:|..|.||:|.:.........:||.|..:.::.| |::...||...|  :|::.|.|:.|
plant   441 FKTLHNLEYIALSNNRISGKFPEWLWSLPRLSSVFITDN-LLTGFEGSSEVLVNSSVQILSLDTN 504

  Fly   544 QLE-KLFQLPISLNELYFSHNRLTNIPSGTWPV----MNSLIYLDLSHNQLGDTLNGESFTG--- 600
            .|| .|..||:|:|  |||  .:.|...|..|:    .:||..||||:|         :|||   
plant   505 SLEGALPHLPLSIN--YFS--AIDNRFGGDIPLSICNRSSLDVLDLSYN---------NFTGPIP 556

  Fly   601 --LLVVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLP-------VLFELN 656
              |..:..|||:.|.:.....|.....:.|:.|.:..|.:|       ||||       .|..|:
plant   557 PCLSNLLYLKLRKNNLEGSIPDKYYEDTPLRSLDVGYNRLT-------GKLPRSLINCSALQFLS 614

  Fly   657 LYGNQVKDISKRAFEGLLQLLTLNLSSN---GIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTN 718
            :..|.:||....:.:.|.:|..|.||||   |..:..|:..:|.|.||.|:::.|.||.      
plant   615 VDHNGIKDTFPFSLKALPKLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTG------ 673

  Fly   719 GVLDDLLSLETLDLSHNRISFVTKKTFPSHQYIPYNLR---NLNLSYNLMPILTYDITFGTKKLV 780
                               ||::...|.:.:...:.:.   .|.:.|..:....|.:|:    ..
plant   674 -------------------SFLSSDFFVNWKASSHTMNEDLGLYMVYGKVIFGNYHLTY----YE 715

  Fly   781 RLDVSHNQINDLRRGVISNFTSLQSLDMSYNELSNLKSEEHIFDLPQNLSW------LDLSHNKI 839
            .:|:.:..::..:|.|:   ||..::|.|.|.|..        ::|:::..      |:||:|..
plant   716 TIDLRYKGLSMEQRNVL---TSSATIDFSGNRLEG--------EIPESIGLLKALIALNLSNNAF 769

  Fly   840 Y-HLP--FANLVKVKSLKYVDLTNNSLE-DVP----------------ASIVGSMRNGSQVL--- 881
            . |:|  ||||.|::||   ||::|.|. .:|                ..::|.:..|:|:.   
plant   770 TGHIPLSFANLKKMESL---DLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIGEIPQGTQITGQP 831

  Fly   882 ---LAGNPLHCGCNARPLKYFMLQQTIAGEDLKSIYCGTPALIKDKQLISLDDEYLHCAEDEQ 941
               ..||...||        |.||::..|.:       ||.....|:   .::|    .||||
plant   832 KSSFEGNAGLCG--------FPLQESCFGTN-------TPPAQHPKE---QEEE----EEDEQ 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380 6/22 (27%)
leucine-rich repeat 150..175 CDD:275380 4/24 (17%)
leucine-rich repeat 176..199 CDD:275380 6/29 (21%)
LRR_8 198..258 CDD:290566 19/67 (28%)
leucine-rich repeat 200..223 CDD:275380 7/22 (32%)
LRR_RI 201..545 CDD:238064 86/369 (23%)
leucine-rich repeat 224..271 CDD:275380 13/55 (24%)
LRR_8 245..306 CDD:290566 13/61 (21%)
leucine-rich repeat 272..295 CDD:275380 5/22 (23%)
LRR_8 296..354 CDD:290566 16/70 (23%)
leucine-rich repeat 296..319 CDD:275380 5/22 (23%)
LRR_8 322..401 CDD:290566 22/93 (24%)
leucine-rich repeat 322..343 CDD:275380 7/33 (21%)
leucine-rich repeat 344..367 CDD:275380 8/24 (33%)
leucine-rich repeat 371..390 CDD:275380 2/18 (11%)
leucine-rich repeat 391..414 CDD:275380 4/22 (18%)
leucine-rich repeat 416..438 CDD:275380 2/21 (10%)
LRR_8 437..495 CDD:290566 18/57 (32%)
leucine-rich repeat 439..462 CDD:275380 4/22 (18%)
leucine-rich repeat 463..486 CDD:275380 9/22 (41%)
LRR_RI 486..738 CDD:238064 76/273 (28%)
LRR_8 486..545 CDD:290566 17/60 (28%)
leucine-rich repeat 487..510 CDD:275380 6/22 (27%)
leucine-rich repeat 511..534 CDD:275380 6/24 (25%)
leucine-rich repeat 535..554 CDD:275380 8/19 (42%)
LRR_8 554..614 CDD:290566 23/68 (34%)
leucine-rich repeat 555..578 CDD:275380 7/26 (27%)
leucine-rich repeat 579..603 CDD:275380 10/28 (36%)
leucine-rich repeat 604..627 CDD:275380 5/22 (23%)
LRR_8 626..710 CDD:290566 28/93 (30%)
leucine-rich repeat 628..649 CDD:275380 5/20 (25%)
leucine-rich repeat 652..672 CDD:275380 5/19 (26%)
LRR_8 698..765 CDD:290566 12/69 (17%)
leucine-rich repeat 700..726 CDD:275380 6/25 (24%)
leucine-rich repeat 727..745 CDD:275380 2/17 (12%)
LRR_8 777..839 CDD:290566 14/67 (21%)
leucine-rich repeat 779..802 CDD:275380 3/22 (14%)
leucine-rich repeat 829..852 CDD:275380 11/31 (35%)
RLP40NP_566757.2 LRR_RI 97..>263 CDD:238064 42/174 (24%)
LRR_8 130..190 CDD:290566 17/86 (20%)
leucine-rich repeat 131..155 CDD:275380 8/49 (16%)
leucine-rich repeat 156..179 CDD:275380 5/23 (22%)
leucine-rich repeat 180..202 CDD:275380 7/22 (32%)
LRR_8 201..264 CDD:290566 19/68 (28%)
leucine-rich repeat 203..228 CDD:275380 7/24 (29%)
leucine-rich repeat 229..253 CDD:275380 5/29 (17%)
leucine-rich repeat 254..277 CDD:275380 5/22 (23%)
leucine-rich repeat 278..300 CDD:275380 8/34 (24%)
leucine-rich repeat 301..324 CDD:275380 4/23 (17%)
leucine-rich repeat 325..349 CDD:275380 8/23 (35%)
leucine-rich repeat 350..371 CDD:275380 2/20 (10%)
LRR_8 422..481 CDD:290566 18/67 (27%)
leucine-rich repeat 424..446 CDD:275380 9/22 (41%)
leucine-rich repeat 447..468 CDD:275380 5/20 (25%)
leucine-rich repeat 471..495 CDD:275380 6/24 (25%)
leucine-rich repeat 517..540 CDD:275380 7/26 (27%)
leucine-rich repeat 541..585 CDD:275380 15/52 (29%)
LRR_8 560..620 CDD:290566 16/66 (24%)
leucine-rich repeat 563..583 CDD:275380 5/19 (26%)
leucine-rich repeat 586..609 CDD:275380 8/29 (28%)
leucine-rich repeat 610..633 CDD:275380 6/22 (27%)
leucine-rich repeat 634..660 CDD:275380 9/25 (36%)
leucine-rich repeat 735..758 CDD:275380 5/30 (17%)
leucine-rich repeat 759..782 CDD:275380 10/22 (45%)
LRR_8 762..817 CDD:290566 18/57 (32%)
leucine-rich repeat 783..806 CDD:275380 7/25 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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