DRSC/TRiP Functional Genomics Resources

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Protein Alignment conv and RLP34

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_001326087.1 Gene:RLP34 / 820272 AraportID:AT3G11010 Length:957 Species:Arabidopsis thaliana


Alignment Length:895 Identity:221/895 - (24%)
Similarity:331/895 - (36%) Gaps:272/895 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 CNVSHNALSELS------RGTFARNSVLKVLHL------SHNQIARLDANSFRGMRFLRRLFLSD 303
            ||.....:.||:      .|.|..||.::.||.      |||.......:|...:..|..|.||.
plant    90 CNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDRSHNDFEGQITSSIENLSHLTSLDLSY 154

  Fly   304 NVLTDIGRGTFGSIARIGTIDLARNRLKKIEFQMFTQMNYVELLDLAENNITKIEKNSFKDIYQA 368
            |..:.....:.|:::|:.::||:.|:...........::::..|.|:.|..       |..|..:
plant   155 NRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSHLTFLGLSGNRF-------FGQIPSS 212

  Fly   369 IINVSHNALELIETAAFENCVNITVLDLSHNRLANFSRRSFDETTFATYFQLSYNNLTNLAQIP- 432
            |.|:||                :|.|.||.||.......|....:..|...||||..:  .||| 
plant   213 IGNLSH----------------LTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYS--GQIPS 259

  Fly   433 -IQNMTGLKVLNASYNSI-TEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDLSHN 495
             |.|::.|.||..|.|:. .|||.: |..|.:|..:|||.|.:...|..|...|..|..:.||:|
plant   260 SIGNLSQLIVLYLSVNNFYGEIPSS-FGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLSNN 323

  Fly   496 SMREIKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLNNNQLEKLFQLPISLNELYF 560
            ...       ||||.                 ::..|::|...|.::|..               
plant   324 KFT-------GTLPP-----------------NITSLSNLMAFYASDNAF--------------- 349

  Fly   561 SHNRLTNIPSGTWP----VMNSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQNNGISQPPKDA 621
                     :||:|    ::.||.||.||.|||..|                |:...||.|    
plant   350 ---------TGTFPSFLFIIPSLTYLGLSGNQLKGT----------------LEFGNISSP---- 385

  Fly   622 VAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNL--YGNQVKDISKRAFEGLLQLLTLNLSSN 684
                |.||||::.:||......|:..||..|.||.:  ...|.:.:....|..|..|..|.||..
plant   386 ----SNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCRPVDFSIFSHLKSLDDLRLSYL 446

  Fly   685 GIQTLQ-NDIFVGLPSLRNLDLSFNSLTKLDNKTN------------------GVLD--DLL--- 725
            ...|:. |||.....:||:||||.| |....||::                  |:.|  ::|   
plant   447 TTTTIDLNDILPYFKTLRSLDLSGN-LVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQ 510

  Fly   726 -SLETLDLSHNRISFVTKKTFPSHQYIPYNLRNLNLSYNLM----------PILTYDITFGTKKL 779
             .|..||:|:|:|    |...|...:...||..||||.|..          |.:.|         
plant   511 HELGFLDVSNNKI----KGQVPGWLWTLPNLFYLNLSNNTFIGFQRPTKPEPSMAY--------- 562

  Fly   780 VRLDVSHNQINDLRRGVISNFTSLQSLDMSYNELS--------NLKSE----------------E 820
              |..|:|.........|....||.:||:|.|..|        ||||.                |
plant   563 --LLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPE 625

  Fly   821 HIFDLPQNLSWLDLSHNKIY-HLP-----FANLVKVKSLKYVDLTNNSLEDVPASIVGSMRNGSQ 879
            |||   ::|..||:.||::. .||     |:|      |:.:::.:|.:.|:....:.|::....
plant   626 HIF---ESLRSLDVGHNQLVGKLPRSLRFFSN------LEVLNVESNRINDMFPFWLSSLQKLQV 681

  Fly   880 VLLAGNPLHCGCN-------------------ARPLKYFMLQQTIAG----EDLKSI-YCGTPAL 920
            ::|..|..|...|                   :.|.:||:....::.    ||..:: |.|: ..
plant   682 LVLRSNAFHGPINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGS-GY 745

  Fly   921 IKDKQLISLDDEYLHCAEDEQEMYKGIDYEQLTDVRFREVKT------NK--------AGMLTLC 971
            .:|..::               |.||::.|.   ||...:.|      ||        .|:|...
plant   746 YQDSMVL---------------MNKGVESEL---VRILTIYTAVDFSGNKFEGEIPKSIGLLKEL 792

  Fly   972 WYVSGFSDVSDFHVYIRSSSNDV--LHQSDYAYNNRTAQIPVE--ELSTL 1017
             :|...|: :.|..:|.||..::  |...|.:.|....:||.|  .||.|
plant   793 -HVLNLSN-NAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLL 840

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
LRR_8 198..258 CDD:290566 2/6 (33%)
leucine-rich repeat 200..223 CDD:275380
LRR_RI 201..545 CDD:238064 80/308 (26%)
leucine-rich repeat 224..271 CDD:275380 7/25 (28%)
LRR_8 245..306 CDD:290566 19/66 (29%)
leucine-rich repeat 272..295 CDD:275380 6/28 (21%)
LRR_8 296..354 CDD:290566 13/57 (23%)
leucine-rich repeat 296..319 CDD:275380 6/22 (27%)
LRR_8 322..401 CDD:290566 17/78 (22%)
leucine-rich repeat 322..343 CDD:275380 3/20 (15%)
leucine-rich repeat 344..367 CDD:275380 5/22 (23%)
leucine-rich repeat 371..390 CDD:275380 3/18 (17%)
leucine-rich repeat 391..414 CDD:275380 7/22 (32%)
leucine-rich repeat 416..438 CDD:275380 10/23 (43%)
LRR_8 437..495 CDD:290566 21/58 (36%)
leucine-rich repeat 439..462 CDD:275380 10/23 (43%)
leucine-rich repeat 463..486 CDD:275380 8/22 (36%)
LRR_RI 486..738 CDD:238064 71/282 (25%)
LRR_8 486..545 CDD:290566 12/58 (21%)
leucine-rich repeat 487..510 CDD:275380 7/22 (32%)
leucine-rich repeat 511..534 CDD:275380 1/22 (5%)
leucine-rich repeat 535..554 CDD:275380 3/18 (17%)
LRR_8 554..614 CDD:290566 14/63 (22%)
leucine-rich repeat 555..578 CDD:275380 3/26 (12%)
leucine-rich repeat 579..603 CDD:275380 9/23 (39%)
leucine-rich repeat 604..627 CDD:275380 4/22 (18%)
LRR_8 626..710 CDD:290566 31/86 (36%)
leucine-rich repeat 628..649 CDD:275380 7/20 (35%)
leucine-rich repeat 652..672 CDD:275380 5/21 (24%)
LRR_8 698..765 CDD:290566 28/90 (31%)
leucine-rich repeat 700..726 CDD:275380 13/49 (27%)
leucine-rich repeat 727..745 CDD:275380 7/17 (41%)
LRR_8 777..839 CDD:290566 24/85 (28%)
leucine-rich repeat 779..802 CDD:275380 4/22 (18%)
leucine-rich repeat 829..852 CDD:275380 9/28 (32%)