DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and chadla

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:XP_017210255.1 Gene:chadla / 565474 ZFINID:ZDB-GENE-121205-4 Length:791 Species:Danio rerio


Alignment Length:746 Identity:172/746 - (23%)
Similarity:307/746 - (41%) Gaps:117/746 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 NLSDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLG 249
            |..:||...|:....|..|.|.|..::.::...|:.|..|..||:::|.|..|..:....|:.|.
Zfish    62 NFGELPKNAFKHTPYLTQLSLQGCSVQAVREGAFRGLSRLLQLDLTNNNIDILYQESFDGLSSLK 126

  Fly   250 WCNVSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTF 314
            ...:..|.:.|:..|.||..:.|.:|.|::||:..|...:|:||..::.|.||.|.|.::....|
Zfish   127 QLYLDRNRIEEIHPGAFAALNSLNLLSLTYNQLVYLPNMAFQGMMNIQMLHLSHNSLNNLATEAF 191

  Fly   315 GSIARIGTIDLARNRLKKIEFQMFTQMNYVELLDLAENNITKIEKNSFKDIYQAIINVSHNALEL 379
            ..:..:..::|..|.|:....:..|::..|..||::.|.:|.:.:.|........:::.||||:.
Zfish   192 AGLLALTHLNLDHNELQYFPTKTMTRLIEVTHLDMSYNPMTYLVEESVVMPKLTHLSLKHNALQD 256

  Fly   380 IETAAFENCVNITVLDLSHNRLANFSRRSFDETTFATYFQLSYNNL------------------- 425
            :..:.......|:.||||.|:|:..  ::...:|..|...|:.|.:                   
Zfish   257 LSESTISLSPVISHLDLSFNQLSYI--QALAASTHLTSLNLTGNPIRCTCLLRDLKLWALKSGIR 319

  Fly   426 --------TNLAQIPIQNM-------------------TGLK----------VLNASYNSITEIP 453
                    .:|:..|::|:                   .|.|          |..|......:.|
Zfish   320 LFGVCAWPPHLSDEPLENVQEQDLRCRPQDEWTSDVIEEGTKEEEEGVQEKTVSTAKSKKTRKCP 384

  Fly   454 KNCFPKLYELHTI--DVSHNNISSIFNGVFQTLFSLRSIDLSHNSMREIKSSTFGTLPTLLEMDL 516
            |:|..:....|..  :..|..:.|.|..  :||.    :|:..|....:.|.:|..:|.::.:.|
Zfish   385 KDCLCEYAAQHATCENRGHTKVPSGFPR--KTLL----LDMRGNHFHYLPSKSFPGIPEVVSLHL 443

  Fly   517 SHNELVSVVRGSLAKLTSLRQLYLNNNQLE----KLFQLPISLNELYFSHNRLTNIP-SGTWPVM 576
            ...::..:..|:...:.:|..|||::|||.    |:|:....:..|:...|:||:.| |.|...:
Zfish   444 DSCKIHEIEGGAFQGMKNLIYLYLSDNQLSSLDAKVFEGAHEIMYLHLEDNKLTHFPSSATLTHI 508

  Fly   577 NSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTL 641
            ..|:.|.|..|.:.........:.:|.:..|.|.||.|:.....|:.....|..||||:|.:|.:
Zfish   509 PKLLELHLERNLIAKLEPSGLLSPVLQLTGLYLNNNSIATIVPKALDPAPKLDVLHLEDNVLTDV 573

  Fly   642 ERSAFGKLPVLFELNLYGNQVKDISKRAF----EGLLQLLTLNLSSNGIQTLQNDIFVGL-PSLR 701
            ...|....|:|.||:|.||.::.|..|||    |.|..||   :...|:|.:......|. |.|.
Zfish   574 PSDALDHAPLLTELHLSGNLIRWIGPRAFRVVAESLKNLL---IDRMGLQKMSVRSLAGFGPRLL 635

  Fly   702 NLDLSFNSLTKLDNKTNGVLDDLLSLETLDLSHNRISFVTKKTFPSHQYIPYNLRNLNLSYNLMP 766
            :|.|..|.|.:|.:     |..|..|:.|.|:.|.: ....|..|.::::.      .:|..:..
Zfish   636 SLSLEDNLLEELPD-----LSPLAGLQNLSLNKNPL-MCDCKLLPFYRWLE------KMSLRVEA 688

  Fly   767 ILTYDITFGTKKLVRLDVSHNQINDLRRGVISNFTSLQSLDMSYNELSNLKSEEHIFDLPQ---- 827
            :..|......:.::...:..|             .|:::.. |:||.| :.::.|..::|.    
Zfish   689 VCFYPSELRGQSVMESAIYKN-------------CSIENAH-SFNETS-IPTKAHEPNIPNPTQP 738

  Fly   828 ---NLSWLDLSHNKIYHLPFANLVKVKSLKY 855
               :.:.|.|:..||...|    .|.||.::
Zfish   739 TEPSYAKLKLAKTKIAATP----KKTKSKEF 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380 4/13 (31%)
LRR_8 198..258 CDD:290566 15/59 (25%)
leucine-rich repeat 200..223 CDD:275380 6/22 (27%)
LRR_RI 201..545 CDD:238064 86/401 (21%)
leucine-rich repeat 224..271 CDD:275380 13/46 (28%)
LRR_8 245..306 CDD:290566 20/60 (33%)
leucine-rich repeat 272..295 CDD:275380 9/22 (41%)
LRR_8 296..354 CDD:290566 14/57 (25%)
leucine-rich repeat 296..319 CDD:275380 6/22 (27%)
LRR_8 322..401 CDD:290566 20/78 (26%)
leucine-rich repeat 322..343 CDD:275380 4/20 (20%)
leucine-rich repeat 344..367 CDD:275380 6/22 (27%)
leucine-rich repeat 371..390 CDD:275380 4/18 (22%)
leucine-rich repeat 391..414 CDD:275380 7/22 (32%)
leucine-rich repeat 416..438 CDD:275380 6/67 (9%)
LRR_8 437..495 CDD:290566 14/69 (20%)
leucine-rich repeat 439..462 CDD:275380 6/32 (19%)
leucine-rich repeat 463..486 CDD:275380 6/24 (25%)
LRR_RI 486..738 CDD:238064 73/261 (28%)
LRR_8 486..545 CDD:290566 12/58 (21%)
leucine-rich repeat 487..510 CDD:275380 4/22 (18%)
leucine-rich repeat 511..534 CDD:275380 2/22 (9%)
leucine-rich repeat 535..554 CDD:275380 9/22 (41%)
LRR_8 554..614 CDD:290566 16/60 (27%)
leucine-rich repeat 555..578 CDD:275380 7/23 (30%)
leucine-rich repeat 579..603 CDD:275380 4/23 (17%)
leucine-rich repeat 604..627 CDD:275380 6/22 (27%)
LRR_8 626..710 CDD:290566 31/88 (35%)
leucine-rich repeat 628..649 CDD:275380 8/20 (40%)
leucine-rich repeat 652..672 CDD:275380 10/23 (43%)
LRR_8 698..765 CDD:290566 16/66 (24%)
leucine-rich repeat 700..726 CDD:275380 8/25 (32%)
leucine-rich repeat 727..745 CDD:275380 5/17 (29%)
LRR_8 777..839 CDD:290566 10/68 (15%)
leucine-rich repeat 779..802 CDD:275380 1/22 (5%)
leucine-rich repeat 829..852 CDD:275380 6/22 (27%)
chadlaXP_017210255.1 LRRNT 22..49 CDD:279764
leucine-rich repeat 55..76 CDD:275380 4/13 (31%)
LRR_8 75..135 CDD:290566 15/59 (25%)
leucine-rich repeat 77..100 CDD:275380 6/22 (27%)
leucine-rich repeat 101..124 CDD:275380 7/22 (32%)
leucine-rich repeat 125..148 CDD:275380 6/22 (27%)
leucine-rich repeat 149..172 CDD:275380 9/22 (41%)
LRR_8 172..231 CDD:290566 14/58 (24%)
leucine-rich repeat 173..196 CDD:275380 6/22 (27%)
leucine-rich repeat 197..220 CDD:275380 4/22 (18%)
leucine-rich repeat 221..243 CDD:275380 6/21 (29%)
LRR_8 242..300 CDD:290566 15/59 (25%)
leucine-rich repeat 244..267 CDD:275380 4/22 (18%)
leucine-rich repeat 417..437 CDD:275380 4/19 (21%)
LRR_8 436..496 CDD:290566 14/59 (24%)
leucine-rich repeat 438..461 CDD:275380 2/22 (9%)
LRR_RI <451..658 CDD:238064 64/214 (30%)
leucine-rich repeat 462..485 CDD:275380 9/22 (41%)
leucine-rich repeat 486..510 CDD:275380 7/23 (30%)
leucine-rich repeat 511..535 CDD:275380 4/23 (17%)
LRR_8 535..594 CDD:290566 21/58 (36%)
leucine-rich repeat 536..559 CDD:275380 6/22 (27%)
leucine-rich repeat 560..583 CDD:275380 8/22 (36%)
leucine-rich repeat 584..608 CDD:275380 10/23 (43%)
leucine-rich repeat 609..633 CDD:275380 6/26 (23%)
leucine-rich repeat 634..656 CDD:275380 8/26 (31%)
LRRCT 664..>699 CDD:214507 5/41 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D121256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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