DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and chp

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster


Alignment Length:1097 Identity:253/1097 - (23%)
Similarity:453/1097 - (41%) Gaps:275/1097 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TLVLLHFIALASSEYVYGEPEFKCPKKSKALYP-------CECVKGSDNGLYIRCENTNLATLSV 65
            ||:::.:::||.:.....|.|       :..||       |.|.|.|.:...:.|:|.....|..
  Fly    17 TLMIMIWMSLARASMFDREME-------ETHYPPCTYNVMCTCSKSSTDLGIVHCKNVPFPALPR 74

  Fly    66 ALQNLASFGMPIEELTIYRGHFVRLYGPLFAHIKARMLIIEETPLATIEDYVFYGVNNTLEQLHL 130
            .:.....|                            ||.:|.|.|..||.|.             
  Fly    75 MVNQSKVF----------------------------MLHMENTGLREIEPYF------------- 98

  Fly   131 LRTNLSHVGLLGFGILGKAKELVIDGHAFQQLPKDLFAGQEIANSLGIIRVTNGNLSDLPIETFQ 195
                |...|:.         .|.|.|:...::|.|.|.|.|  .||..:.:...:|.::|.::.:
  Fly    99 ----LQSTGMY---------RLKISGNHLTEIPDDAFTGLE--RSLWELILPQNDLVEIPSKSLR 148

  Fly   196 PLRKLKTLDLHGNQLENLKRNQFKNLRE-LEVLDISHNQIKKLEAQHIADLTKLGWCNVSHNALS 259
            .|:||:.|||..|.:.:::.:.|:.|.: |:.|.:..|.|.:|               :||    
  Fly   149 HLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQL---------------MSH---- 194

  Fly   260 ELSRGTFARNSVLKVLHLSHNQIARLDANSF-RGMRFLRRLFLSDNVLTDIGRGTFGSIARIGTI 323
                 :|:...:|:.|.||.|.:..:|.|.| .||..|.||.|:||:|::|.....|.:..:.|:
  Fly   195 -----SFSGLLILETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTL 254

  Fly   324 DLARNRL------KKIEFQMFTQMNYVELLDLAENNITKIEKNSFK------------------- 363
            |::.|.:      :..|.:..|::| ::.|.|..|:|..:..||||                   
  Fly   255 DISHNVIWSLSGNETYEIKASTKLN-LDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLR 318

  Fly   364 -DIYQAI----INVSHNALELIETAAFENCVN-ITVLDLSHNRLANFSRRSFD------------ 410
             |.::..    |.:.:..|..|...||::.|| :.:||||.|.|.....:.|:            
  Fly   319 EDAFKPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRD 383

  Fly   411 ---------ETTFATYFQL-------SYNNLTNLAQI-PIQNMTGLKVLNASYNSITEIPKNCFP 458
                     ||..|.::.|       ..|:.|||..: .::||..|.:.....:|:.  |::...
  Fly   384 NKIKIQKPTETFNAVHYTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVG--PEDFKD 446

  Fly   459 KLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDLSHNSMREIKSSTFGTL-PTLLEMDLSHNELV 522
            ...||..:.::..::|.|.:..|:.:..|:.:|.|.|.:..|::..|..: .:|:.:.:||.   
  Fly   447 FGVELEDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHG--- 508

  Fly   523 SVVRGSLAKLTSLRQLYLNNNQLEKLFQLPISLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHN 587
              ..||......||.|              .||.||.||:|.::::...::..:.:|..|:|..|
  Fly   509 --YSGSALPAEPLRHL--------------TSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDN 557

  Fly   588 QLGDTLNGESFTGLL--VVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLP 650
            ::...|.| :|.|.:  .::.:.|:.|.::...:.....:..|:.|||::|.|..:||.||..|.
  Fly   558 RIEQVLKG-TFQGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLD 621

  Fly   651 VLFELNLYGNQVKDISKRAFEGLLQLLTLNLSSNGIQTLQNDIF--VGLPSLRNLDLSFNSLTKL 713
            .|..|:|.||::.:::..:|:.|.:|..|:::.|.:.....|.|  ||..|..|:::|.|.:.:|
  Fly   622 ELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQL 686

  Fly   714 --------DNKTNGVLDDLLSLETLDLSHNRISFVTKKTFP------SHQYIPYN---------- 754
                    .|:..|:...  :::.||||||.||.:....|.      :|.::.||          
  Fly   687 MYNSSWSGRNEHGGMYHS--NIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVF 749

  Fly   755 -----LRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQINDLRRGVISNFTSLQSLDMSYNELS 814
                 |:.|:||||.:..|.:|....||:|..:...||.::|:.:.:......|:.:|.|:|   
  Fly   750 GNMPHLQWLDLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHN--- 811

  Fly   815 NLKSEEHIFDLPQNLSW------LDLSHNKIYHLPFANLV------------------------- 848
                  |:..||.||.:      ||:|||.:..:|.::|.                         
  Fly   812 ------HLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDL 870

  Fly   849 --KVKSLKYVDLTNNSLEDVPASIVGSMRNGSQVLLAGNPLHCGCNARPLKY----FM-LQQTIA 906
              |.:||:|:|::.|.|..:..::..:|...:.:.|:.|        |.||.    || |:.::.
  Fly   871 SNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHN--------RDLKVMDKSFMGLENSLI 927

  Fly   907 GEDLKSIYCGTPALIKDKQLISLDDEYLHCAEDEQEMYKGIDYEQLTDVRFREVKTN 963
            ...|::|...|...|:.|.|......|.......||:     ...::::|..::..|
  Fly   928 KLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQEL-----AHNMSNLRMLDLSNN 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380 2/22 (9%)
leucine-rich repeat 150..175 CDD:275380 8/24 (33%)
leucine-rich repeat 176..199 CDD:275380 4/22 (18%)
LRR_8 198..258 CDD:290566 15/60 (25%)
leucine-rich repeat 200..223 CDD:275380 7/22 (32%)
LRR_RI 201..545 CDD:238064 94/406 (23%)
leucine-rich repeat 224..271 CDD:275380 8/46 (17%)
LRR_8 245..306 CDD:290566 19/61 (31%)
leucine-rich repeat 272..295 CDD:275380 10/23 (43%)
LRR_8 296..354 CDD:290566 18/63 (29%)
leucine-rich repeat 296..319 CDD:275380 9/22 (41%)
LRR_8 322..401 CDD:290566 27/109 (25%)
leucine-rich repeat 322..343 CDD:275380 5/26 (19%)
leucine-rich repeat 344..367 CDD:275380 9/42 (21%)
leucine-rich repeat 371..390 CDD:275380 4/18 (22%)
leucine-rich repeat 391..414 CDD:275380 9/43 (21%)
leucine-rich repeat 416..438 CDD:275380 7/29 (24%)
LRR_8 437..495 CDD:290566 11/57 (19%)
leucine-rich repeat 439..462 CDD:275380 3/22 (14%)
leucine-rich repeat 463..486 CDD:275380 4/22 (18%)
LRR_RI 486..738 CDD:238064 69/264 (26%)
LRR_8 486..545 CDD:290566 14/59 (24%)
leucine-rich repeat 487..510 CDD:275380 6/23 (26%)
leucine-rich repeat 511..534 CDD:275380 5/22 (23%)
leucine-rich repeat 535..554 CDD:275380 3/18 (17%)
LRR_8 554..614 CDD:290566 17/61 (28%)
leucine-rich repeat 555..578 CDD:275380 6/22 (27%)
leucine-rich repeat 579..603 CDD:275380 8/25 (32%)
leucine-rich repeat 604..627 CDD:275380 2/22 (9%)
LRR_8 626..710 CDD:290566 29/85 (34%)
leucine-rich repeat 628..649 CDD:275380 10/20 (50%)
leucine-rich repeat 652..672 CDD:275380 6/19 (32%)
LRR_8 698..765 CDD:290566 25/95 (26%)
leucine-rich repeat 700..726 CDD:275380 6/33 (18%)
leucine-rich repeat 727..745 CDD:275380 8/17 (47%)
LRR_8 777..839 CDD:290566 19/67 (28%)
leucine-rich repeat 779..802 CDD:275380 4/22 (18%)
leucine-rich repeat 829..852 CDD:275380 9/55 (16%)
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 8/35 (23%)
LRR_8 102..163 CDD:290566 20/71 (28%)
leucine-rich repeat 104..128 CDD:275380 8/34 (24%)
LRR_RI <128..261 CDD:238064 43/156 (28%)
leucine-rich repeat 129..152 CDD:275380 4/22 (18%)
LRR_8 152..212 CDD:290566 21/83 (25%)
leucine-rich repeat 153..177 CDD:275380 7/23 (30%)
leucine-rich repeat 178..201 CDD:275380 8/46 (17%)
LRR_8 202..261 CDD:290566 22/58 (38%)
leucine-rich repeat 202..226 CDD:275380 10/23 (43%)
leucine-rich repeat 227..250 CDD:275380 9/22 (41%)
leucine-rich repeat 251..279 CDD:275380 5/27 (19%)
leucine-rich repeat 280..326 CDD:275380 9/45 (20%)
LRR_8 326..386 CDD:290566 14/59 (24%)
leucine-rich repeat 327..348 CDD:275380 5/20 (25%)
leucine-rich repeat 352..375 CDD:275380 7/22 (32%)
leucine-rich repeat 376..401 CDD:275380 3/24 (13%)
leucine-rich repeat 426..450 CDD:275378 4/25 (16%)
LRR_RI <448..651 CDD:238064 55/222 (25%)
leucine-rich repeat 451..474 CDD:275380 4/22 (18%)
LRR_8 473..559 CDD:290566 25/104 (24%)
leucine-rich repeat 475..524 CDD:275380 14/67 (21%)
leucine-rich repeat 500..519 CDD:275380 5/23 (22%)
leucine-rich repeat 525..548 CDD:275380 6/22 (27%)
leucine-rich repeat 549..574 CDD:275380 8/25 (32%)
LRR_8 573..633 CDD:290566 18/59 (31%)
leucine-rich repeat 575..598 CDD:275380 2/22 (9%)
leucine-rich repeat 599..622 CDD:275380 11/22 (50%)
LRR_8 622..683 CDD:290566 18/60 (30%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..730 CDD:275380 23/84 (27%)
leucine-rich repeat 648..673 CDD:275380 6/24 (25%)
leucine-rich repeat 674..705 CDD:275380 6/32 (19%)
LRR_8 704..763 CDD:290566 16/60 (27%)
leucine-rich repeat 731..754 CDD:275380 3/22 (14%)
LRR_8 753..813 CDD:290566 18/68 (26%)
leucine-rich repeat 755..778 CDD:275380 9/22 (41%)
leucine-rich repeat 779..802 CDD:275380 4/22 (18%)
leucine-rich repeat 803..823 CDD:275380 9/28 (32%)
leucine-rich repeat 852..876 CDD:275380 1/23 (4%)
LRR_8 854..910 CDD:290566 10/63 (16%)
LRR_RI <877..>1006 CDD:238064 25/116 (22%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 8/31 (26%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
LRR_8 947..1004 CDD:290566 6/38 (16%)
leucine-rich repeat 947..970 CDD:275380 4/27 (15%)
leucine-rich repeat 971..993 CDD:275380 2/9 (22%)
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42484
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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