DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and tlr4bb

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_997978.2 Gene:tlr4bb / 403132 ZFINID:ZDB-GENE-040219-9 Length:819 Species:Danio rerio


Alignment Length:860 Identity:182/860 - (21%)
Similarity:312/860 - (36%) Gaps:251/860 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 RRLFLSD-NVLTDIGRGTF---------------------GSIA-RIGTIDLARNRLKKIEFQMF 338
            |.:|||. .:|.:.|:|..                     ||:. .:.::|.:.|.|..:..::|
Zfish     8 RMIFLSSIFILVNAGQGQECTELIKNKEYSCSGRNLTCIPGSLPFSVASLDFSFNFLTSLHKRVF 72

  Fly   339 TQMNYVELLDLAENNITKIEKNSFKDIYQAIINVSHNALELIETA-----AFENCVN-------I 391
            ..|..::||||....|.:|||::|.::        .|.:.||.|.     ....|:|       :
Zfish    73 PVMLNLQLLDLTRCYIRQIEKDAFYNV--------KNLMTLILTGNPITYLAPECLNSLYKLQRL 129

  Fly   392 TVLDLSHNRLANFSRRSFDETTFATYFQLSYNNLTNLAQIP-----IQNMT---------GLKVL 442
            .::|:   ||.:              .||..||||.|..:.     ||:||         ...:|
Zfish   130 VLVDV---RLES--------------LQLQINNLTKLQDLKVGTNCIQSMTLPSFMSTFKDFSLL 177

  Fly   443 NASYNSITEIPKNCFPKLYEL---HTIDVSHNNISSIFNGVFQTLFSLRSIDL-----SHNSMRE 499
            :...|:|:.|..:....|.|:   .|:.:|.|.:..|..|.|:.:. ||.:.|     |.|:.:|
Zfish   178 DLHANNISIIRMDHTAVLREIGRNMTLILSRNPLIHIEPGAFKDVI-LRELHLLAAFISFNAQKE 241

  Fly   500 IKSSTFG-------------------TLPTLLE--MDLSHNELVSVVRG-------------SLA 530
            ...:..|                   ::|..||  ..::.||:..|.:.             :..
Zfish   242 CHKALTGLTVDKLFVGRYRMDEKIKVSVPDYLEGLCSINFNEIYLVQKEWSDSEMHLFRCMVNAT 306

  Fly   531 KLTSLRQLYLNNNQLEKLFQLPI-SLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLN 594
            |:| :::.|:|:     :..:|. .|.|||.|...|:.:|.             :||.       
Zfish   307 KIT-IKKAYMNS-----MKHIPFHRLKELYLSDTGLSVVPF-------------ISHI------- 345

  Fly   595 GESFTGLLVVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYG 659
             .|...|::.....:...|:|..|        .|||:.|..|.:...|..:.             
Zfish   346 -PSLEKLVMKSPFPITFTGVSDLP--------LLQYVDLSGNMLILHECCSI------------- 388

  Fly   660 NQVKDISKRAFEGLLQLLTLNLSSNGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGVLDDL 724
                                             :|...|:::.|:||.||.....|:....||  
Zfish   389 ---------------------------------LFPRTPNIQYLNLSQNSEITFVNEPFSALD-- 418

  Fly   725 LSLETLDLSHNRISFVTKKTFPSHQYIPYNLRNLNLSYNLMPILTYDITF-GTKKLVRLDVSHNQ 788
             .||.||..|.::..|....|..|.   .||:.|::||..:...|  :|| ....|..|.::.|.
Zfish   419 -LLEVLDFHHTKLVIVFYFGFFKHL---RNLKYLDISYTRVHFNT--LTFQDLHNLTVLKMAGNS 477

  Fly   789 IN-DLRRGVISNFTSLQSLDMSYNELSNLKSEEHIFDLPQNLSWLDLSHNKIYHLPFANLVKVKS 852
            .: |.....:.|.|||:.||:|...:..:....  |...|.|..|.||.||:..|.|....::..
Zfish   478 FSGDKLSYFLQNLTSLEVLDISQCGIEKVSMRS--FTGTQKLRHLYLSRNKLMVLDFLTQPELTH 540

  Fly   853 LKYVDLTNNSLEDVPASIVGSM-RNGSQVLLAGNPLHCGCNARPLKYFMLQQTIAGEDLKSIYCG 916
            |..|.:..||:..:|..::..: .|.|:..|:.|.:.|.|:......:::|:....:.|::|.|.
Zfish   541 LTSVYIDKNSITTIPLDVLQKLPMNLSEFDLSSNSIDCSCSQTDFILWIIQKQNILKQLENIRCK 605

  Fly   917 TPALIKDKQLISLDDEYLHCAEDEQ------------------EMYKGIDYEQLTDVRFREVKTN 963
            |.:...|.:.|..|.:|  |...::                  .:||...|.|...:.|...:: 
Zfish   606 TFSANTDFKAIDFDIDY--CVHKKRLTIVLSVICVTFVVVLAILLYKFWFYVQYCFILFSGYRS- 667

  Fly   964 KAGMLTLCWY-----VSGFSDVSDFHVYIRSSSNDV------LHQSDYAYNNRTAQIPVEELSTL 1017
             .|... |.|     .|.:.:....:..:.:..|.|      ||..|:......|...::| ..:
Zfish   668 -PGQQE-CSYDAFVIFSSYDEAWVMNELMENLENGVPPIQLCLHMRDFQAGKSIASNIIDE-GIM 729

  Fly  1018 GEEKLRGAEICIVSR 1032
            |..|:    |.:||:
Zfish   730 GSRKI----IVVVSQ 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
LRR_8 198..258 CDD:290566
leucine-rich repeat 200..223 CDD:275380
LRR_RI 201..545 CDD:238064 72/338 (21%)
leucine-rich repeat 224..271 CDD:275380
LRR_8 245..306 CDD:290566 4/9 (44%)
leucine-rich repeat 272..295 CDD:275380
LRR_8 296..354 CDD:290566 18/79 (23%)
leucine-rich repeat 296..319 CDD:275380 9/44 (20%)
LRR_8 322..401 CDD:290566 21/90 (23%)
leucine-rich repeat 322..343 CDD:275380 5/20 (25%)
leucine-rich repeat 344..367 CDD:275380 9/22 (41%)
leucine-rich repeat 371..390 CDD:275380 5/23 (22%)
leucine-rich repeat 391..414 CDD:275380 3/22 (14%)
leucine-rich repeat 416..438 CDD:275380 11/35 (31%)
LRR_8 437..495 CDD:290566 17/74 (23%)
leucine-rich repeat 439..462 CDD:275380 5/22 (23%)
leucine-rich repeat 463..486 CDD:275380 6/25 (24%)
LRR_RI 486..738 CDD:238064 53/291 (18%)
LRR_8 486..545 CDD:290566 17/97 (18%)
leucine-rich repeat 487..510 CDD:275380 7/46 (15%)
leucine-rich repeat 511..534 CDD:275380 6/37 (16%)
leucine-rich repeat 535..554 CDD:275380 3/19 (16%)
LRR_8 554..614 CDD:290566 11/59 (19%)
leucine-rich repeat 555..578 CDD:275380 7/22 (32%)
leucine-rich repeat 579..603 CDD:275380 4/23 (17%)
leucine-rich repeat 604..627 CDD:275380 3/22 (14%)
LRR_8 626..710 CDD:290566 12/83 (14%)
leucine-rich repeat 628..649 CDD:275380 6/20 (30%)
leucine-rich repeat 652..672 CDD:275380 0/19 (0%)
LRR_8 698..765 CDD:290566 22/66 (33%)
leucine-rich repeat 700..726 CDD:275380 8/25 (32%)
leucine-rich repeat 727..745 CDD:275380 6/17 (35%)
LRR_8 777..839 CDD:290566 18/62 (29%)
leucine-rich repeat 779..802 CDD:275380 5/23 (22%)
leucine-rich repeat 829..852 CDD:275380 8/22 (36%)
tlr4bbNP_997978.2 leucine-rich repeat 56..77 CDD:275380 5/20 (25%)
LRR_8 77..133 CDD:290566 15/63 (24%)
leucine-rich repeat 78..101 CDD:275380 9/30 (30%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
leucine-rich repeat 126..148 CDD:275380 8/38 (21%)
leucine-rich repeat 149..173 CDD:275380 5/23 (22%)
leucine-rich repeat 174..200 CDD:275380 6/25 (24%)
leucine-rich repeat 201..222 CDD:275380 6/20 (30%)
LRR_RI <325..531 CDD:238064 65/290 (22%)
leucine-rich repeat 326..369 CDD:275380 14/71 (20%)
leucine-rich repeat 370..395 CDD:275380 7/70 (10%)
LRR_8 394..455 CDD:290566 22/66 (33%)
leucine-rich repeat 396..419 CDD:275380 8/25 (32%)
leucine-rich repeat 420..444 CDD:275380 8/26 (31%)
LRR_8 443..527 CDD:290566 26/87 (30%)
leucine-rich repeat 445..467 CDD:275380 7/23 (30%)
leucine-rich repeat 468..492 CDD:275380 5/23 (22%)
LRR_8 491..576 CDD:290566 25/86 (29%)
leucine-rich repeat 493..516 CDD:275380 5/24 (21%)
leucine-rich repeat 517..540 CDD:275380 8/22 (36%)
leucine-rich repeat 541..565 CDD:275380 5/23 (22%)
TIR 675..816 CDD:214587 14/71 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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