DRSC/TRiP Functional Genomics Resources

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Protein Alignment conv and tlr4ba

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:XP_009305503.1 Gene:tlr4ba / 403131 ZFINID:ZDB-GENE-040219-8 Length:824 Species:Danio rerio


Alignment Length:846 Identity:173/846 - (20%)
Similarity:318/846 - (37%) Gaps:228/846 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 SHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRG---TFG 315
            |.|...:|.:..|...|.|:||.||...|.:::.::|..::.|..|||:.|.:.....|   |..
Zfish    59 SFNFFPQLKKTIFPVLSFLRVLDLSRCHIRQIENDAFYNVKNLTTLFLTGNPIIYFAPGCLNTLY 123

  Fly   316 SIARIGTIDLARNRLKKIEFQMFTQMNYVELLDLAENNITKIEKNSFKDIYQAIINVSHNALELI 380
            ::.|:..:|:.                 :|.|.|..||:||:::          :||..|.::.:
Zfish   124 NLQRLVLVDIG-----------------LESLQLNINNLTKLQE----------LNVGTNYIQSM 161

  Fly   381 ETAAFENCV-NITVLDLSHNRLANFSRRSFDETTFATYFQLSYNNLTNLAQIPIQNMTGLKVLNA 444
            ....|.... |.::|||..|.::                .:..|:...|.:|. :|||    |..
Zfish   162 TLPPFMTTFKNFSLLDLHANNIS----------------IIRTNHTVVLREIG-RNMT----LIL 205

  Fly   445 SYNSITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDLSH---------NSMREI 500
            ::|.:..|....|..:| |..:|:....:|  |:.....|.:|..:::..         |....:
Zfish   206 TWNPLLHIEPGAFKDVY-LRQLDIRSAFVS--FSAQKAALKALHGLNVKRLIFGKYREDNGFHFV 267

  Fly   501 KSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLT-SLRQLYLNNNQLE----KLFQLPI----SLN 556
            .:.....|......::|:..|.|      ||.| ::.:..:|..::.    .::::..    ...
Zfish   268 DNDVLDGLCCFNFQEVSYYVLES------AKTTIAIFRCMINATRITVKGGNIYEMETVHFHKTK 326

  Fly   557 ELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQNNGISQPPKDA 621
            |||..:|.|..:|:.....:::|..|:::||  .:.:..|.||.|                ||  
Zfish   327 ELYLINNGLGTLPTKQLSHLHTLEKLEITHN--SEPIFAEPFTDL----------------PK-- 371

  Fly   622 VAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISKRAFEGLLQLLTLNLSSNGI 686
                  |||:.|.:|.:                      ::|........|..|:..||||.|..
Zfish   372 ------LQYVDLSDNQL----------------------KIKHCCSTLLSGTPQINYLNLSLNSE 408

  Fly   687 QTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGVLDDLLSLETLDLSHNRISFVTKKTFPSHQYI 751
            .::....|.||.||..||.|:..:.::...:  ||.:|.:|..||:|::.::|       |:.:.
Zfish   409 ISVDVGGFEGLDSLEILDFSYTRVVRIGYLS--VLSNLKNLRYLDVSYSSVTF-------SNIFC 464

  Fly   752 PYNLRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQI-NDLRRGVISNFTSLQSLDMSYNELSN 815
            ...|.:||:                     |.::.|.. .::.:.|.:|.|.|:.||||:..|..
Zfish   465 FLGLSSLNV---------------------LKMAGNNFQGNVAKYVFNNLTLLEHLDMSFCHLVE 508

  Fly   816 LKSEEHIFDLPQNLSWLDLSHNKIYHLPFANLVKVKSLKYVDLTNNSLEDVPASIVGSM-RNGSQ 879
            |.:..  |...|.|..|::..|.:..:.|.....:|.|....:..||:..:|..::.:: .|.|:
Zfish   509 LHTSS--FKYLQRLRHLNVKGNYLIKIDFLTHPNLKQLTSFYVEKNSITAIPLHVLKNLPMNLSE 571

  Fly   880 VLLAGNPLHCGCNARPLKYFMLQQTIAGEDLKSIYCGTPALIKDKQLISLDDEYLHCAEDEQEMY 944
            ..|:.||:.|.|:......:::......:..::|.|.|.:...|.::...|.:  ||      :|
Zfish   572 FDLSFNPIDCSCSQTDFMLWIINNQKVLKQPENILCKTISPNSDFRVTDFDID--HC------VY 628

  Fly   945 KGIDYEQLTDV-----------------RFREVKTNKAGMLTLCW-----YVSGFSDVSDFHVYI 987
            |    ::|..|                 ||:       ..|..||     |.|.......:..::
Zfish   629 K----KKLIIVLPVFCVVFIVVLSILVYRFQ-------FYLRYCWILLRGYRSPGQQECSYDAFV 682

  Fly   988 RSSSND---------------------VLHQSDYAYNNRTAQIPVEELSTLGEEKLRGAEICIVS 1031
            ..||.|                     .||..|:......|...::| ..:|..|:    |.:||
Zfish   683 IFSSYDEAWVMNELMENLENGVPPIQLCLHMRDFQAGKSIASNIIDE-GIMGSRKI----IVVVS 742

  Fly  1032 R 1032
            :
Zfish   743 Q 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
LRR_8 198..258 CDD:290566 2/3 (67%)
leucine-rich repeat 200..223 CDD:275380
LRR_RI 201..545 CDD:238064 63/304 (21%)
leucine-rich repeat 224..271 CDD:275380 4/16 (25%)
LRR_8 245..306 CDD:290566 17/51 (33%)
leucine-rich repeat 272..295 CDD:275380 7/22 (32%)
LRR_8 296..354 CDD:290566 13/60 (22%)
leucine-rich repeat 296..319 CDD:275380 7/25 (28%)
LRR_8 322..401 CDD:290566 17/79 (22%)
leucine-rich repeat 322..343 CDD:275380 1/20 (5%)
leucine-rich repeat 344..367 CDD:275380 7/22 (32%)
leucine-rich repeat 371..390 CDD:275380 4/19 (21%)
leucine-rich repeat 391..414 CDD:275380 4/22 (18%)
leucine-rich repeat 416..438 CDD:275380 5/21 (24%)
LRR_8 437..495 CDD:290566 12/66 (18%)
leucine-rich repeat 439..462 CDD:275380 4/22 (18%)
leucine-rich repeat 463..486 CDD:275380 5/22 (23%)
LRR_RI 486..738 CDD:238064 54/269 (20%)
LRR_8 486..545 CDD:290566 10/68 (15%)
leucine-rich repeat 487..510 CDD:275380 3/31 (10%)
leucine-rich repeat 511..534 CDD:275380 6/23 (26%)
leucine-rich repeat 535..554 CDD:275380 1/26 (4%)
LRR_8 554..614 CDD:290566 14/59 (24%)
leucine-rich repeat 555..578 CDD:275380 6/22 (27%)
leucine-rich repeat 579..603 CDD:275380 8/23 (35%)
leucine-rich repeat 604..627 CDD:275380 2/22 (9%)
LRR_8 626..710 CDD:290566 21/83 (25%)
leucine-rich repeat 628..649 CDD:275380 5/20 (25%)
leucine-rich repeat 652..672 CDD:275380 1/19 (5%)
LRR_8 698..765 CDD:290566 17/66 (26%)
leucine-rich repeat 700..726 CDD:275380 7/25 (28%)
leucine-rich repeat 727..745 CDD:275380 5/17 (29%)
LRR_8 777..839 CDD:290566 17/62 (27%)
leucine-rich repeat 779..802 CDD:275380 4/23 (17%)
leucine-rich repeat 829..852 CDD:275380 4/22 (18%)
tlr4baXP_009305503.1 leucine-rich repeat 54..76 CDD:275380 4/16 (25%)
LRR_8 77..132 CDD:290566 15/54 (28%)
leucine-rich repeat 77..100 CDD:275380 7/22 (32%)
leucine-rich repeat 101..124 CDD:275380 7/22 (32%)
leucine-rich repeat 125..147 CDD:275380 7/38 (18%)
leucine-rich repeat 148..173 CDD:275380 4/34 (12%)
leucine-rich repeat 175..201 CDD:275380 7/42 (17%)
leucine-rich repeat 325..348 CDD:275380 6/22 (27%)
LRR_RI <326..458 CDD:238064 44/181 (24%)
LRR_8 326..382 CDD:290566 21/81 (26%)
leucine-rich repeat 349..371 CDD:275380 8/39 (21%)
leucine-rich repeat 372..421 CDD:275380 16/70 (23%)
LRR_8 396..454 CDD:290566 20/59 (34%)
leucine-rich repeat 422..446 CDD:275380 7/25 (28%)
LRR_8 445..506 CDD:290566 19/88 (22%)
leucine-rich repeat 447..470 CDD:275380 7/29 (24%)
leucine-rich repeat 471..495 CDD:275380 6/44 (14%)
LRR_8 496..579 CDD:290566 22/84 (26%)
leucine-rich repeat 496..519 CDD:275380 8/24 (33%)
leucine-rich repeat 520..543 CDD:275380 4/22 (18%)
leucine-rich repeat 544..568 CDD:275380 4/23 (17%)
TIR 678..819 CDD:214587 13/71 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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