DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and Tlr4

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_062051.2 Gene:Tlr4 / 29260 RGDID:3870 Length:835 Species:Rattus norvegicus


Alignment Length:746 Identity:189/746 - (25%)
Similarity:302/746 - (40%) Gaps:216/746 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 NLS----DLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADL 245
            |||    |:|..|       |.|||..|.|:.|:...|.|..:|:.||:|..:|:.:|.:     
  Rat    43 NLSKIPHDIPYST-------KNLDLSFNPLKILRSYSFSNFSQLQWLDLSRCEIETIEDK----- 95

  Fly   246 TKLGWCNVSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIG 310
               .|     :.|::||           .|.|:.|.|......||.|:..|..|...:..:|.:.
  Rat    96 ---AW-----HGLNQLS-----------TLVLTGNPIKSFSPGSFSGLTNLENLVAVETKMTSLE 141

  Fly   311 RGTFGSIARIGTIDLARNRLKKIEF-QMFTQMNYVELLDLAENNITKIEKNSFKDIYQAIINVSH 374
            ....|.:..:..:::|.|.:...:. :.|:.:..:|.:||:.|.|..|   |.||          
  Rat   142 GFHIGQLISLKKLNVAHNLIHSFKLPEYFSNLTNLEHVDLSYNYIQTI---SVKD---------- 193

  Fly   375 NALELIETAAFEN-CVNITVLDLSHNRLANFSRRSFD-----ETTFATYFQLSYNNLTNLAQIPI 433
              |:.:.    || .||:: ||||.|.:.:...::|.     |.|..:.|     |.:|:.::.:
  Rat   194 --LQFLR----ENPQVNLS-LDLSLNPIDSIQAQAFQGIRLHELTLRSNF-----NSSNVLKMCL 246

  Fly   434 QNMTGLKV-------------LNASYNSITE----IPKNCFPKLYELHTIDVSHN-----NISSI 476
            ||||||.|             |.:...|:.|    :..:.|...|..|..|..:|     |||::
  Rat   247 QNMTGLHVHRLILGEFKNERNLESFDRSVMEGLCNVSIDEFRLTYINHFSDDIYNLNCLANISAM 311

  Fly   477 -FNGV-------------FQTLFSLRSIDLSHNSMREIKSSTFGTLPTLLEMDLSHN-ELVSVVR 526
             |.||             :|:|..:|.         .:|.....:||.|....|:.| |.:|.  
  Rat   312 SFTGVHIKHIADVPRHFKWQSLSIIRC---------HLKPFPKLSLPFLKSWTLTTNREDISF-- 365

  Fly   527 GSLAKLTSLRQLYLNNNQLEKLFQLPISLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGD 591
            |.|| |.|||.|.|:.|.:.  |:...|.::.            ||    |:|.|||||.|  |.
  Rat   366 GQLA-LPSLRYLDLSRNAMS--FRGCCSYSDF------------GT----NNLKYLDLSFN--GV 409

  Fly   592 TLNGESFTGLLVVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTL-ERSAFGKLPVLFEL 655
            .|...:|.||                        ..|:||..:::.:..: |.|.|..|..|..|
  Rat   410 ILMSANFMGL------------------------EELEYLDFQHSTLKKVTEFSVFLSLEKLLYL 450

  Fly   656 NLYGNQVKDISKRAFEGLLQLLTLNLSSNGIQ--TLQNDIFVGLPSLRNLDLSFNSLTKLDNKTN 718
            ::.....|......|.||:.|.||.::.|..:  ||.| :|....:|..|||   |..:|:..:.
  Rat   451 DISYTNTKIDFDGIFLGLISLNTLKMAGNSFKDNTLSN-VFTNTTNLTFLDL---SKCQLEQISR 511

  Fly   719 GVLDDLLSLETLDLSHNRISFVTKKTFPSHQYIPYNLRNLNLSYNLMPILTYDITFGTKKLVRLD 783
            ||.|.|..|:.|::|||.:.|:.    |||....|:||.|:.|:|                 |::
  Rat   512 GVFDTLYRLQLLNMSHNNLLFLD----PSHYKQLYSLRTLDCSFN-----------------RIE 555

  Fly   784 VSHNQINDLRRGVISNF-TSLQSLDMSYNELSNLKSEEHIFDLPQNLSWLDLSHNKIYHLPFANL 847
            .|        :|::.:| .||...:::.|.::.:...::.      |.|  :...|::      |
  Rat   556 TS--------KGILQHFPKSLAVFNLTNNSVACICEYQNF------LQW--VKDQKMF------L 598

  Fly   848 VKVKSLKYVDLTNNSLEDVPASIVGSMRNGS 878
            |.|:.:|..     |..|:.||:|....|.:
  Rat   599 VNVEQMKCA-----SPIDMKASLVLDFTNST 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380 6/17 (35%)
LRR_8 198..258 CDD:290566 16/59 (27%)
leucine-rich repeat 200..223 CDD:275380 9/22 (41%)
LRR_RI 201..545 CDD:238064 100/387 (26%)
leucine-rich repeat 224..271 CDD:275380 10/46 (22%)
LRR_8 245..306 CDD:290566 13/60 (22%)
leucine-rich repeat 272..295 CDD:275380 7/22 (32%)
LRR_8 296..354 CDD:290566 11/58 (19%)
leucine-rich repeat 296..319 CDD:275380 4/22 (18%)
LRR_8 322..401 CDD:290566 22/80 (28%)
leucine-rich repeat 322..343 CDD:275380 3/21 (14%)
leucine-rich repeat 344..367 CDD:275380 9/22 (41%)
leucine-rich repeat 371..390 CDD:275380 3/19 (16%)
leucine-rich repeat 391..414 CDD:275380 7/27 (26%)
leucine-rich repeat 416..438 CDD:275380 6/21 (29%)
LRR_8 437..495 CDD:290566 21/93 (23%)
leucine-rich repeat 439..462 CDD:275380 6/39 (15%)
leucine-rich repeat 463..486 CDD:275380 11/41 (27%)
LRR_RI 486..738 CDD:238064 72/255 (28%)
LRR_8 486..545 CDD:290566 19/59 (32%)
leucine-rich repeat 487..510 CDD:275380 3/22 (14%)
leucine-rich repeat 511..534 CDD:275380 9/23 (39%)
leucine-rich repeat 535..554 CDD:275380 6/18 (33%)
LRR_8 554..614 CDD:290566 16/59 (27%)
leucine-rich repeat 555..578 CDD:275380 2/22 (9%)
leucine-rich repeat 579..603 CDD:275380 12/23 (52%)
leucine-rich repeat 604..627 CDD:275380 0/22 (0%)
LRR_8 626..710 CDD:290566 25/86 (29%)
leucine-rich repeat 628..649 CDD:275380 6/21 (29%)
leucine-rich repeat 652..672 CDD:275380 4/19 (21%)
LRR_8 698..765 CDD:290566 25/66 (38%)
leucine-rich repeat 700..726 CDD:275380 10/25 (40%)
leucine-rich repeat 727..745 CDD:275380 6/17 (35%)
LRR_8 777..839 CDD:290566 9/62 (15%)
leucine-rich repeat 779..802 CDD:275380 4/23 (17%)
leucine-rich repeat 829..852 CDD:275380 6/22 (27%)
Tlr4NP_062051.2 PLN00113 23..>456 CDD:215061 132/524 (25%)
LRR 1 54..75 9/27 (33%)
leucine-rich repeat 58..78 CDD:275380 8/19 (42%)
LRR 2 78..99 7/33 (21%)
leucine-rich repeat 79..102 CDD:275380 8/35 (23%)
LRR 3 102..123 8/31 (26%)
leucine-rich repeat 103..126 CDD:275380 9/33 (27%)
LRR 4 126..147 3/20 (15%)
leucine-rich repeat 127..150 CDD:275380 4/22 (18%)
LRR 5 150..171 2/20 (10%)
leucine-rich repeat 151..175 CDD:275380 3/23 (13%)
LRR 6 175..198 10/37 (27%)
leucine-rich repeat 176..204 CDD:275380 12/46 (26%)
LRR 7 204..224 7/20 (35%)
leucine-rich repeat 205..226 CDD:275380 6/21 (29%)
LRR 8 226..247 5/25 (20%)
leucine-rich repeat 256..310 CDD:275380 10/53 (19%)
LRR 9 372..381 5/8 (63%)
leucine-rich repeat 373..398 CDD:275380 9/42 (21%)
LRR 10 398..420 12/47 (26%)
leucine-rich repeat 399..421 CDD:275380 12/47 (26%)
LRR 11 421..442 5/20 (25%)
leucine-rich repeat 422..446 CDD:275380 7/23 (30%)
LRR 12 446..467 4/20 (20%)
leucine-rich repeat 447..470 CDD:275380 6/22 (27%)
LRR 13 470..491 7/21 (33%)
leucine-rich repeat 471..495 CDD:275380 8/24 (33%)
LRR_8 494..554 CDD:404697 25/83 (30%)
LRR 14 495..516 8/23 (35%)
leucine-rich repeat 496..519 CDD:275380 10/25 (40%)
LRR 15 519..540 9/24 (38%)
leucine-rich repeat 520..543 CDD:275380 9/26 (35%)
LRR 16 543..564 8/45 (18%)
leucine-rich repeat 544..567 CDD:275380 9/47 (19%)
TIR 672..813 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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