DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and lron-5

DIOPT Version :10

Sequence 1:NP_610948.2 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_497943.2 Gene:lron-5 / 184307 WormBaseID:WBGene00008656 Length:656 Species:Caenorhabditis elegans


Alignment Length:717 Identity:171/717 - (23%)
Similarity:280/717 - (39%) Gaps:239/717 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 TLEQLHLLRTNLSHVGLLGFGILGKAKELVIDGHAFQQLPKDLFAGQEIANSLGIIRVTNGNLSD 188
            |:.||||...||                        .|.|..||     ..:|.::|::...:.:
 Worm    50 TIRQLHLNSLNL------------------------PQPPHFLF-----HPNLRVLRMSRCGMHE 85

  Fly   189 LPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLGWCNV 253
            :|..||.||..|:.:||..|.||.|.....::|:.|.||.:|:|::..|:        :|.|   
 Worm    86 IPGSTFLPLPGLEVIDLSNNHLETLPPTVLRSLKFLRVLILSNNRLSNLD--------QLTW--- 139

  Fly   254 SHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTFG--- 315
                       ..|...||:.|.||.|.||  .|.|......:|:|||||..:..:......   
 Worm   140 -----------ILAPGVVLEQLDLSGNPIA--IATSMTVFPPVRQLFLSDTRMESVNETAIMFKK 191

  Fly   316 ------------------SIARIGTIDLARNRLKKIE---FQMFTQMNYVELLDLAENNITKI-- 357
                              :::.|.|||.:.||..:|:   ..:|:...||:|.:      |::  
 Worm   192 LPGKCDRDVCRHIPIHNLNVSIITTIDFSSNRDLEIDSGALDVFSNATYVDLSN------TRLPV 250

  Fly   358 -------EKNSFKDIYQAIINVSHNALELIE---TAAFENCVNITVLDLSHNRLANFSRRSFDET 412
                   .|:..|.     :|:||..|.|.|   ||..:...::.:..:...|| .|||.....:
 Worm   251 GFEEWLERKSRVKS-----LNISHCQLPLHEDTWTACGQFLHSLDISGIGAKRL-RFSRFCPIRS 309

  Fly   413 TFATYFQLSYNNLTNLAQIPIQNMTGLKVLNASYNSITEIPKNCFP----KLYELHTIDVSHNNI 473
            .||.      :||.:...|   :...::.|:...|..:|.|   .|    :|.||||:.:|||.:
 Worm   310 VFAR------DNLISSVYI---DAVSMESLHLERNMFSEFP---IPPPGVELTELHTLGLSHNLM 362

  Fly   474 SSIFNGVFQTLFSLRSIDLSHNSMREIKSSTFGTLPT-LLEMDLSHNELVSVVRGSLAKLTSLRQ 537
            :|:.....|:..:|:..|:|.|.:.||....|.::.. |:.:|||.|:|.|              
 Worm   363 TSLPPHALQSYPNLQHFDVSSNQLSEIDPQAFPSIGLGLISLDLSSNQLSS-------------- 413

  Fly   538 LYLNNNQLEKLFQLPISLNELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGLL 602
                         ||         |           |::.||:.||||.|.:.. |:...||||.
 Worm   414 -------------LP---------H-----------PILPSLLLLDLSFNTISH-LDPHFFTGLP 444

  Fly   603 VVQRLKLQNNGISQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISK 667
            ::|:|::.:|                          .||    |.:.|         |:......
 Worm   445 MLQQLRIASN--------------------------PTL----FSRCP---------NRDSPCWS 470

  Fly   668 RAFEGLLQLLTLNLSSNGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGVLDDLLSLETLDL 732
            ...:.|..|:.|::|::|::...:  :..|.:|::|.|..|.:..:|:|:   |.:  :|.||||
 Worm   471 DHLDELTSLVDLDISNSGLEFSLH--WRHLRTLKSLILRGNEIRIIDSKS---LPE--NLRTLDL 528

  Fly   733 SHNRISFVTKKTFPSHQYIPYNLRNLNLSYNLMPI----LTYDITFGTKKLVRLDVSH----NQI 789
            ..||:.|.:..:...|      ||:|.:..|  |:    ..|||           |.|    :||
 Worm   529 GENRVQFTSNFSKLEH------LRDLRVDQN--PLRCDCSLYDI-----------VPHLLNQSQI 574

  Fly   790 ND 791
            :|
 Worm   575 SD 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_610948.2 leucine-rich repeat 125..148 CDD:275380 6/22 (27%)
leucine-rich repeat 150..175 CDD:275380 4/24 (17%)
leucine-rich repeat 176..199 CDD:275380 7/22 (32%)
PPP1R42 191..359 CDD:455733 49/200 (25%)
LRR_8 198..258 CDD:404697 16/59 (27%)
leucine-rich repeat 200..223 CDD:275380 8/22 (36%)
leucine-rich repeat 224..271 CDD:275380 9/46 (20%)
leucine-rich repeat 272..295 CDD:275380 9/22 (41%)
leucine-rich repeat 296..319 CDD:275380 6/43 (14%)
leucine-rich repeat 322..343 CDD:275380 7/23 (30%)
leucine-rich repeat 344..367 CDD:275380 5/31 (16%)
LRR 346..718 CDD:443914 87/388 (22%)
leucine-rich repeat 371..390 CDD:275380 8/21 (38%)
leucine-rich repeat 391..414 CDD:275380 5/22 (23%)
leucine-rich repeat 416..438 CDD:275380 3/21 (14%)
leucine-rich repeat 439..462 CDD:275380 6/26 (23%)
leucine-rich repeat 463..486 CDD:275380 8/22 (36%)
leucine-rich repeat 487..510 CDD:275380 7/22 (32%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
leucine-rich repeat 535..554 CDD:275380 2/18 (11%)
leucine-rich repeat 555..578 CDD:275380 2/22 (9%)
leucine-rich repeat 579..603 CDD:275380 11/23 (48%)
leucine-rich repeat 604..627 CDD:275380 3/22 (14%)
leucine-rich repeat 628..649 CDD:275380 3/20 (15%)
PPP1R42 631..849 CDD:455733 40/169 (24%)
leucine-rich repeat 652..672 CDD:275380 1/19 (5%)
leucine-rich repeat 700..726 CDD:275380 7/25 (28%)
leucine-rich repeat 727..745 CDD:275380 8/17 (47%)
leucine-rich repeat 779..802 CDD:275380 5/17 (29%)
leucine-rich repeat 829..852 CDD:275380
lron-5NP_497943.2 LRR <48..>186 CDD:443914 51/188 (27%)
leucine-rich repeat 51..72 CDD:275380 10/49 (20%)
leucine-rich repeat 73..96 CDD:275380 7/22 (32%)
leucine-rich repeat 97..120 CDD:275380 8/22 (36%)
leucine-rich repeat 121..146 CDD:275380 9/46 (20%)
leucine-rich repeat 147..168 CDD:275380 9/22 (41%)
leucine-rich repeat 169..208 CDD:275380 6/38 (16%)
leucine-rich repeat 209..237 CDD:275380 8/27 (30%)
leucine-rich repeat 238..284 CDD:275380 14/56 (25%)
leucine-rich repeat 327..351 CDD:275380 6/26 (23%)
LRR <348..>555 CDD:443914 74/308 (24%)
leucine-rich repeat 352..375 CDD:275380 8/22 (36%)
leucine-rich repeat 376..391 CDD:275380 6/14 (43%)
leucine-rich repeat 401..445 CDD:275380 23/91 (25%)
leucine-rich repeat 446..478 CDD:275380 9/70 (13%)
leucine-rich repeat 479..500 CDD:275380 5/22 (23%)
leucine-rich repeat 501..522 CDD:275380 7/25 (28%)
leucine-rich repeat 523..544 CDD:275380 8/20 (40%)
LRRCT 553..601 CDD:214507 10/37 (27%)
Blue background indicates that the domain is not in the aligned region.

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