DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment conv and lron-9

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:NP_001076615.1 Gene:lron-9 / 172529 WormBaseID:WBGene00011971 Length:653 Species:Caenorhabditis elegans


Alignment Length:695 Identity:155/695 - (22%)
Similarity:266/695 - (38%) Gaps:180/695 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 AAFENCVNITVL----DLSHNRLAN----FSRRSFDETTFATYFQLSYNNLTNL----------- 428
            ||..||.::.||    |||.:.|.|    |.:.  |:........|..:||.:|           
 Worm    19 AAIPNCPDLDVLENQSDLSQDDLNNLILCFCKP--DDKEKVVISCLYGSNLDHLMKATEAVKNAS 81

  Fly   429 ---AQIPIQNMTGLKVLNASYNSITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSI 490
               :.|.||:|              |.|....|:                 |..:...|.||...
 Worm    82 LITSSISIQHM--------------EFPDGGLPE-----------------FGKLAPDLKSLEIK 115

  Fly   491 DLSHNSMREIKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLNNNQLEKL----FQL 551
            :.|.....::...:|..|...|.....|...:..:..|:..|.:|..:..:||:|:.|    |:.
 Worm   116 ECSGQDELKVGDDSFKGLEQTLRNLTIHACNLQTIPPSVDSLENLETVVFSNNKLDSLGVDQFKN 180

  Fly   552 PISLNELYFSHNRLTNIPSGTWPVMNSLIYLDL-SHNQLGDTLNGESFTGLLVVQRLKLQN-NGI 614
            ...|:.|..|.|.:|:|....:..:.||..|.: .||.:.:|: .|....|..::.|.|.. :||
 Worm   181 KKQLSYLDVSGNFITSIEEKAFEPLTSLETLVIGEHNFINETV-VEEIGRLKALKTLDLSRADGI 244

  Fly   615 SQPPKDAVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISKRAFEGLLQLLTL 679
            .|||:.....:..::.|.|...:|.|||...|..|..|.||:|..|.:::|:..||:||..|..|
 Worm   245 FQPPETLFKEIPQIEVLKLSGCSIPTLEPGQFATLKKLKELDLRVNLIENITAYAFDGLESLTRL 309

  Fly   680 NLSSNGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGVLDDLLSLETLDLSHNRISFVTKKT 744
            :|:.|.|..|:.|:|.||.||..|||.:|.:..:.......|.|  .|:|:.|.:|.||     .
 Worm   310 SLAGNFISKLEPDVFFGLSSLEELDLGWNEIKTIPTDVFKPLTD--KLKTISLRNNPIS-----E 367

  Fly   745 FPSHQYIPYNLRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQINDLRRGVISNFTSLQSLDMS 809
            .||                          .|...|.:|.::......:....:.::..|:.||:|
 Worm   368 LPS--------------------------TGLGMLEKLSLAECGFTSISADQLKDYPKLEELDLS 406

  Fly   810 YNELSNLKSEEHIFD-LPQNLSWLDLSHNKIYHLPFANLVK-VKSLKYVDLTNN----------- 861
            ...:||:  .|:.|: ...:|..|:|..||:..||  ||:| :.:::.:|:::|           
 Worm   407 KCNISNI--VENTFENQKDSLKKLNLQKNKLKSLP--NLIKNLPAIESLDVSSNPYRCDGELVNF 467

  Fly   862 --SLEDVPASIVGSMRNGSQVLLAGNPLHCGCNARPLKYFMLQQTIAGEDLKSIYCGTPALIKDK 924
              .:||   .:..:..||:...:|..                .:|:         |..|..::.:
 Worm   468 VFGVED---RVKKAEENGNSFFVANT----------------NETV---------CDRPYTLRGE 504

  Fly   925 QLISLDDEYLHCAEDEQEMYKGIDYEQLTDVRFREVKTNKAGMLTLCWYVSGFSDVSDFHVYIRS 989
            |::.:            |:.|...|::.:|.      |......|........:::....:.:.|
 Worm   505 QILQV------------EVEKFQPYDEKSDT------TTAPSTTTTSTVEETTTELKIPDLLVGS 551

  Fly   990 SSNDVLHQSD-----Y----------AYNNR-TAQIPVEELSTLG 1018
            .:||.|.:.:     |          .||.: |..:|:    |:|
 Worm   552 RTNDTLFKEEPRRDVYDLSKTDDAKGVYNQKGTYAVPI----TIG 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
LRR_8 198..258 CDD:290566
leucine-rich repeat 200..223 CDD:275380
LRR_RI 201..545 CDD:238064 38/183 (21%)
leucine-rich repeat 224..271 CDD:275380
LRR_8 245..306 CDD:290566
leucine-rich repeat 272..295 CDD:275380
LRR_8 296..354 CDD:290566
leucine-rich repeat 296..319 CDD:275380
LRR_8 322..401 CDD:290566 9/21 (43%)
leucine-rich repeat 322..343 CDD:275380
leucine-rich repeat 344..367 CDD:275380
leucine-rich repeat 371..390 CDD:275380 4/6 (67%)
leucine-rich repeat 391..414 CDD:275380 9/30 (30%)
leucine-rich repeat 416..438 CDD:275380 8/35 (23%)
LRR_8 437..495 CDD:290566 8/57 (14%)
leucine-rich repeat 439..462 CDD:275380 3/22 (14%)
leucine-rich repeat 463..486 CDD:275380 2/22 (9%)
LRR_RI 486..738 CDD:238064 76/257 (30%)
LRR_8 486..545 CDD:290566 12/58 (21%)
leucine-rich repeat 487..510 CDD:275380 4/22 (18%)
leucine-rich repeat 511..534 CDD:275380 4/22 (18%)
leucine-rich repeat 535..554 CDD:275380 6/22 (27%)
LRR_8 554..614 CDD:290566 16/61 (26%)
leucine-rich repeat 555..578 CDD:275380 6/22 (27%)
leucine-rich repeat 579..603 CDD:275380 7/24 (29%)
leucine-rich repeat 604..627 CDD:275380 7/23 (30%)
LRR_8 626..710 CDD:290566 34/83 (41%)
leucine-rich repeat 628..649 CDD:275380 7/20 (35%)
leucine-rich repeat 652..672 CDD:275380 8/19 (42%)
LRR_8 698..765 CDD:290566 16/66 (24%)
leucine-rich repeat 700..726 CDD:275380 7/25 (28%)
leucine-rich repeat 727..745 CDD:275380 6/17 (35%)
LRR_8 777..839 CDD:290566 14/62 (23%)
leucine-rich repeat 779..802 CDD:275380 2/22 (9%)
leucine-rich repeat 829..852 CDD:275380 10/23 (43%)
lron-9NP_001076615.1 leucine-rich repeat 137..159 CDD:275380 4/21 (19%)
LRR_8 159..217 CDD:290566 15/57 (26%)
leucine-rich repeat 160..183 CDD:275380 6/22 (27%)
leucine-rich repeat 184..207 CDD:275380 6/22 (27%)
leucine-rich repeat 208..232 CDD:275380 7/24 (29%)
LRR_8 233..292 CDD:290566 20/58 (34%)
leucine-rich repeat 233..257 CDD:275380 7/23 (30%)
LRR_RI 234..456 CDD:238064 73/258 (28%)
leucine-rich repeat 258..281 CDD:275380 8/22 (36%)
LRR_8 280..340 CDD:290566 26/59 (44%)
leucine-rich repeat 282..305 CDD:275380 10/22 (45%)
leucine-rich repeat 306..329 CDD:275380 10/22 (45%)
LRR_8 328..410 CDD:290566 23/114 (20%)
leucine-rich repeat 330..375 CDD:275380 16/77 (21%)
leucine-rich repeat 376..399 CDD:275380 2/22 (9%)
LRR_8 398..457 CDD:290566 19/62 (31%)
leucine-rich repeat 400..420 CDD:275380 8/21 (38%)
leucine-rich repeat 425..447 CDD:275380 10/23 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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