DRSC/TRiP Functional Genomics Resources

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Protein Alignment conv and chadl

DIOPT Version :9

Sequence 1:NP_001286416.1 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:XP_002934783.2 Gene:chadl / 100491048 XenbaseID:XB-GENE-6050564 Length:721 Species:Xenopus tropicalis


Alignment Length:791 Identity:192/791 - (24%)
Similarity:320/791 - (40%) Gaps:184/791 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 IRVTNGNLSDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIA 243
            :..||.||:::|....|..:|   |||.||.|:.:....|     |.|..::|..::|       
 Frog    35 VACTNKNLTEVPTSIPQYTQK---LDLRGNDLKVIPNGAF-----LSVPYLTHLSLQK------- 84

  Fly   244 DLTKLGWCN---VSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNV 305
                   ||   :...||..|.|        |..|:|..|:|:.:...||.|:..|::|.|..|.
 Frog    85 -------CNIERIEEGALRGLGR--------LVYLNLGSNKISFIYQESFDGLSSLQQLVLEKNR 134

  Fly   306 LTDIGRGTFGSIARIGTIDLARNRLKKIEFQMFTQMNYVELLDLAENNITKIEKNSFKDIYQA-I 369
            |.:|..|.||                        |:.::..|.|.:|.:..:....|:.:.|. .
 Frog   135 LEEIKPGAFG------------------------QLGFLNFLHLGDNFLVYLPDMLFQGLQQVKW 175

  Fly   370 INVSHNALELIETAAFENCVNITVLDLSHNRLANFSRRSFDETTFATYFQLSYNNLTNLAQIPIQ 434
            |.:|:|.:.::...||....|:..|.|.||.|......:....:..|..:|.:|.:|.:::..:|
 Frog   176 IRLSNNMINVVSNEAFAALPNLKRLSLDHNELQYLPTDALSRMSGLTRLELGWNPMTFISEEAVQ 240

  Fly   435 NMTGLKVLNASYNSITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDLSHNSMR- 498
             |..||.|..:..:|.::....|.:..:|..||:|:|.|.:|  .|...|..|..::|:.|::| 
 Frog   241 -MASLKQLFLNNMAIQDLSFKAFERSPQLSLIDLSNNQIRTI--QVLAGLEHLNRLNLTGNAIRC 302

  Fly   499 --EIKSSTFGTLPTLLEMDL-----SHNELVSVVRGSLAKLTSLRQLYLN-NNQLEKLFQLPISL 555
              |::|.......:.:::||     .|      .||.  .|.|||.:.|. .|..|:.:.||   
 Frog   303 DCELRSFKQWADFSKVKVDLFCSGPGH------FRGD--HLDSLRAIDLKCGNFPEEDYNLP--- 356

  Fly   556 NELYFSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQNNGISQPPKD 620
                    .:|..|........|   .|...:.                :.:..:|..:.|.|| 
 Frog   357 --------PITPKPEEESSCPRS---CDCKPDD----------------KHVLCENKFLQQIPK- 393

  Fly   621 AVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQVKDISKRAFEGLLQLLTLNLSSNG 685
            ...|.:||  |.|..|....:.:.||.::..:..|:|...|:.:|...||.|:..|:.|.||.|.
 Frog   394 RFPVDTTL--LDLRKNVFNAIHKGAFSEMKNVASLHLQSCQINEIQPGAFAGMKNLVYLYLSHNH 456

  Fly   686 IQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNGVLDDLLSLETLDLSHNRISFVTKKTFPSHQY 750
            :.::..::|...|                           .:..|.|.|||.:.::|.||   ::
 Frog   457 LSSIDPEVFRDAP---------------------------MIGYLYLDHNRFTRLSKGTF---KF 491

  Fly   751 IPYNLRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQINDLRRGVISNFTSLQSLDMSYNELSN 815
            :| ||.:|::.||.:..|:.:...|..||..:.::.|.||.:......|...|:.|.:..|.|..
 Frog   492 LP-NLFSLHMQYNSISSLSDNFMSGADKLHWVYMTGNNINYIASSAFKNNKDLEKLHLDENLLME 555

  Fly   816 LKSEEHIFDLPQNLSWLDLSHNKI------YHLPFA-----------NLVKVKS---------LK 854
            :.::. |..||. |:.|.||.|.|      ..||.|           .|.::.|         :|
 Frog   556 VPTQA-IKGLPL-LNELRLSKNLIRSIGNGAFLPVARSLQHLYLNDLGLEQISSGGFSGLGQGIK 618

  Fly   855 YVDLTNNSLEDVPASIVGSMR--NGSQVL-LAGNPLHCGCNARPLKYFMLQQTIAGEDLK-SIYC 915
            .:.|.||.|:::|     :|:  .|.:|: ||.||.||.|...|     |.:.|...:|| ...|
 Frog   619 SLHLDNNKLQNIP-----NMKPFTGLEVINLANNPFHCDCRLLP-----LHKWINSLNLKVGATC 673

  Fly   916 GTPALIKDKQL 926
            ..|:..|.:::
 Frog   674 AAPSSAKGQKV 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_001286416.1 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380 6/19 (32%)
LRR_8 198..258 CDD:290566 14/62 (23%)
leucine-rich repeat 200..223 CDD:275380 7/22 (32%)
LRR_RI 201..545 CDD:238064 88/356 (25%)
leucine-rich repeat 224..271 CDD:275380 10/49 (20%)
LRR_8 245..306 CDD:290566 18/63 (29%)
leucine-rich repeat 272..295 CDD:275380 8/22 (36%)
LRR_8 296..354 CDD:290566 13/57 (23%)
leucine-rich repeat 296..319 CDD:275380 9/22 (41%)
LRR_8 322..401 CDD:290566 16/79 (20%)
leucine-rich repeat 322..343 CDD:275380 1/20 (5%)
leucine-rich repeat 344..367 CDD:275380 4/22 (18%)
leucine-rich repeat 371..390 CDD:275380 4/18 (22%)
leucine-rich repeat 391..414 CDD:275380 5/22 (23%)
leucine-rich repeat 416..438 CDD:275380 6/21 (29%)
LRR_8 437..495 CDD:290566 16/57 (28%)
leucine-rich repeat 439..462 CDD:275380 5/22 (23%)
leucine-rich repeat 463..486 CDD:275380 9/22 (41%)
LRR_RI 486..738 CDD:238064 55/260 (21%)
LRR_8 486..545 CDD:290566 17/67 (25%)
leucine-rich repeat 487..510 CDD:275380 6/25 (24%)
leucine-rich repeat 511..534 CDD:275380 6/27 (22%)
leucine-rich repeat 535..554 CDD:275380 7/19 (37%)
LRR_8 554..614 CDD:290566 5/59 (8%)
leucine-rich repeat 555..578 CDD:275380 2/22 (9%)
leucine-rich repeat 579..603 CDD:275380 1/23 (4%)
leucine-rich repeat 604..627 CDD:275380 5/22 (23%)
LRR_8 626..710 CDD:290566 21/83 (25%)
leucine-rich repeat 628..649 CDD:275380 6/20 (30%)
leucine-rich repeat 652..672 CDD:275380 6/19 (32%)
LRR_8 698..765 CDD:290566 15/66 (23%)
leucine-rich repeat 700..726 CDD:275380 0/25 (0%)
leucine-rich repeat 727..745 CDD:275380 6/17 (35%)
LRR_8 777..839 CDD:290566 18/61 (30%)
leucine-rich repeat 779..802 CDD:275380 5/22 (23%)
leucine-rich repeat 829..852 CDD:275380 10/39 (26%)
chadlXP_002934783.2 PPP1R42 37..232 CDD:411060 61/248 (25%)
leucine-rich repeat 53..76 CDD:275380 10/30 (33%)
leucine-rich repeat 77..100 CDD:275380 7/36 (19%)
leucine-rich repeat 101..124 CDD:275380 8/22 (36%)
leucine-rich repeat 125..148 CDD:275380 10/46 (22%)
leucine-rich repeat 149..172 CDD:275380 4/22 (18%)
leucine-rich repeat 173..196 CDD:275380 5/22 (23%)
leucine-rich repeat 197..220 CDD:275380 5/22 (23%)
leucine-rich repeat 221..243 CDD:275380 6/22 (27%)
leucine-rich repeat 244..267 CDD:275380 5/22 (23%)
leucine-rich repeat 268..287 CDD:275380 8/20 (40%)
PCC 272..>346 CDD:188093 23/83 (28%)
leucine-rich repeat 290..337 CDD:275380 12/54 (22%)
inl_like_NEAT_1 <359..>647 CDD:411101 81/347 (23%)
leucine-rich repeat 399..422 CDD:275380 7/24 (29%)
LRR_8 422..481 CDD:404697 18/85 (21%)
leucine-rich repeat 423..446 CDD:275380 7/22 (32%)
leucine-rich repeat 447..470 CDD:275380 7/49 (14%)
leucine-rich repeat 471..494 CDD:275380 9/26 (35%)
leucine-rich repeat 495..518 CDD:275380 6/22 (27%)
leucine-rich repeat 519..542 CDD:275380 5/22 (23%)
leucine-rich repeat 543..566 CDD:275380 6/23 (26%)
leucine-rich repeat 567..591 CDD:275380 9/23 (39%)
leucine-rich repeat 592..615 CDD:275380 2/22 (9%)
leucine-rich repeat 617..639 CDD:275380 7/26 (27%)
leucine-rich repeat 640..651 CDD:275378 5/10 (50%)
LRRCT 647..693 CDD:214507 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D121256at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm14081
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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