DRSC/TRiP Functional Genomics Resources

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Protein Alignment conv and tlr3

DIOPT Version :10

Sequence 1:NP_610948.2 Gene:conv / 36588 FlyBaseID:FBgn0261269 Length:1092 Species:Drosophila melanogaster
Sequence 2:XP_002934448.3 Gene:tlr3 / 100486223 XenbaseID:XB-GENE-491049 Length:897 Species:Xenopus tropicalis


Alignment Length:913 Identity:209/913 - (22%)
Similarity:348/913 - (38%) Gaps:230/913 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 SDLPIETFQPLRKLKTLDLHGNQLENLKRNQFKNLRELEVLDISHNQIKKLEAQHIADLTKLGWC 251
            ||||       |.:|.|||..|||:.|.........:||.||...|.:.:.|......|..|...
 Frog    45 SDLP-------RNIKALDLSHNQLKKLPAANLSVYDQLERLDAGFNTLHQFEPALCKQLLMLKTL 102

  Fly   252 NVSHNALSELSRGTFARNSVLKVLHLSHNQIARLDANSFRGMRFLRRLFLSDNVLTDIGRGTFGS 316
            |:.||..:::|...|.....|..|||:.|.|:.:|.|.|..:..|..|.:|.|.:.....|....
 Frog   103 NLEHNEFTKISENDFTFCVHLSELHLASNGISNIDGNPFEKLENLLFLDMSHNKMISTALGNKQQ 167

  Fly   317 IARIGTIDLARNRLKKIEFQMFTQMNYVEL--LDLAENNITKIEKNSFKDI--YQAIINVSHNAL 377
            :..:..:.|..|::.|:..:.|..:....|  |||:.|.:|:|....|:.|  :.|:: :.:..|
 Frog   168 LNNLKELYLNSNKISKLNKEAFEFLANTSLQKLDLSSNPLTEINPGCFQAIGSFAALV-IQNTQL 231

  Fly   378 ------ELIETAAFENCVNITVLDLSHNRLANFSRRSFDETTFATYFQLSYNNLTNLAQIPIQNM 436
                  ::....|.....|:|:.::..:::.|        |||           ..||.      
 Frog   232 DPQRTEQVCSELAHTGVRNLTLNNIRLSKIRN--------TTF-----------KGLAD------ 271

  Fly   437 TGLKVLNASYNSITEIPKNCFPKLYELHTIDVSHNNISSIFNGVFQTLFSLRSIDL--SHNSMRE 499
            |.|.||:.|.||:::|..:.|..|..|..:::.:|:||.:....|..|..:|.::|  |.:|..:
 Frog   272 TNLTVLDLSGNSLSQIDNDSFVSLGALEILNLENNDISHVNPKTFNGLSKVRVLNLRKSLSSNLK 336

  Fly   500 IKSSTFGTLPTLLEMDLSHNELVSVVRGSLAKLTSLRQLYLNNNQLE------KLFQLPISLNEL 558
            :...:|.:|..:..:::..|:::|:...:...||||..|.|:::.|:      :.| |.:|.:.|
 Frog   337 LDDLSFQSLHNVQYLNMEANKIISITEHTFIGLTSLTNLSLSDSTLQQHTLTNRTF-LSLSKSPL 400

  Fly   559 Y---FSHNRLTNIPSGTWPVMNSLIYLDLSHNQLGDTLNGESFTGLLVVQRLKLQNNGISQPPKD 620
            |   .:...||.|.:|.:..:..|..||:..||:...::|....||                   
 Frog   401 YHLNLTKTGLTKIENGAFLCLKHLQLLDMGLNQIDQEVSGNELEGL------------------- 446

  Fly   621 AVAVMSTLQYLHLENNNITTLERSAFGKLPVLFELNLYGNQV--KDISKRAFEGLLQLLTLNLSS 683
                 :.::.::|..|...||..::|...|.|.:|.|....:  :|::...|:.|..|..|:||:
 Frog   447 -----ANIEMIYLSYNRRITLTSNSFIFAPSLSKLYLRKTALTFRDLNPSPFKVLQNLTVLDLSN 506

  Fly   684 NGIQTLQNDIFVGLPSLRNLDLSFNSLTKLDNKTNG-----VLDDLLSLETLDLSHNRISFVTKK 743
            |.|..:|.|:|..|.:||.|....|:|.:|..:.|.     .|..|.:||.|.|..|....:...
 Frog   507 NNIANIQEDVFESLSNLRILSFEHNNLARLWKEANPGGPVLFLKGLKNLEKLSLLSNGFDEIPAN 571

  Fly   744 TFPSHQYIPYNLRNLNLSYNLMPILTYDITFGTKKLVRLDVSHNQINDLRRGVISNFTSLQSLDM 808
            .|.                            |..||..||:..|.:..|...|..:..||..||:
 Frog   572 AFK----------------------------GLCKLKVLDIGENNVYILPPSVFDDQHSLTLLDL 608

  Fly   809 SYNELSNLKSEEHIFDLPQNLSWLDLSHNKIYHLPFANLVKVKSLKYVDLTNNSLEDVPASIVGS 873
            ..|.:::::.     ||.:|:                    ..||||::                
 Frog   609 HKNLITSVEQ-----DLFKNV--------------------FSSLKYLN---------------- 632

  Fly   874 MRNGSQVLLAGNPLHCGCNARPLKYF--MLQQTIAGEDL--KSIYCGTPALIKDKQLISLDDEYL 934
                    :.|||..|.|.:  :.:|  .|..|.....|  ....|.|||......:.:.|..  
 Frog   633 --------MGGNPYDCTCES--IAWFASWLNTTNTSVPLAHSQYICNTPARYHGNPVDNFDSS-- 685

  Fly   935 HCAEDEQEMYKGIDYEQLTDVRFREVKTNKAGMLTLC----------------WYVS-----GFS 978
            .|.|               ...||...:..:.||...                |.||     ||.
 Frog   686 PCKE---------------LAPFRLFVSTFSLMLVFILSVLLIQFQGWRIHFYWTVSINRILGFK 735

  Fly   979 DVS------DFHVYIRSSSNDVLHQSDYAYNNRTAQIPVEELSTLGEEKLRGAEI--CIVSRDSD 1035
            ::.      |:..||..:.|||....::.       ||:        ||..|:::  |...||.:
 Frog   736 EIDPRKRNFDYDAYIIHAQNDVSWVENHL-------IPL--------EKNAGSKLQFCFEERDLE 785

  Fly  1036 GNT 1038
            ..|
 Frog   786 AGT 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
convNP_610948.2 leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 150..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380 4/11 (36%)
PPP1R42 191..359 CDD:455733 47/169 (28%)
LRR_8 198..258 CDD:404697 20/59 (34%)
leucine-rich repeat 200..223 CDD:275380 8/22 (36%)
leucine-rich repeat 224..271 CDD:275380 13/46 (28%)
leucine-rich repeat 272..295 CDD:275380 9/22 (41%)
leucine-rich repeat 296..319 CDD:275380 5/22 (23%)
leucine-rich repeat 322..343 CDD:275380 4/20 (20%)
leucine-rich repeat 344..367 CDD:275380 9/26 (35%)
LRR 346..718 CDD:443914 96/394 (24%)
leucine-rich repeat 371..390 CDD:275380 2/24 (8%)
leucine-rich repeat 391..414 CDD:275380 3/22 (14%)
leucine-rich repeat 416..438 CDD:275380 2/21 (10%)
leucine-rich repeat 439..462 CDD:275380 9/22 (41%)
leucine-rich repeat 463..486 CDD:275380 6/22 (27%)
leucine-rich repeat 487..510 CDD:275380 6/24 (25%)
leucine-rich repeat 511..534 CDD:275380 3/22 (14%)
leucine-rich repeat 535..554 CDD:275380 6/24 (25%)
leucine-rich repeat 555..578 CDD:275380 6/25 (24%)
leucine-rich repeat 579..603 CDD:275380 8/23 (35%)
leucine-rich repeat 604..627 CDD:275380 0/22 (0%)
leucine-rich repeat 628..649 CDD:275380 5/20 (25%)
PPP1R42 631..849 CDD:455733 53/224 (24%)
leucine-rich repeat 652..672 CDD:275380 5/21 (24%)
leucine-rich repeat 700..726 CDD:275380 9/30 (30%)
leucine-rich repeat 727..745 CDD:275380 5/17 (29%)
leucine-rich repeat 779..802 CDD:275380 6/22 (27%)
leucine-rich repeat 829..852 CDD:275380 0/22 (0%)
tlr3XP_002934448.3 PRK15370 <17..>158 CDD:185268 39/119 (33%)
leucine-rich repeat 54..74 CDD:275380 7/19 (37%)
leucine-rich repeat 75..98 CDD:275380 7/22 (32%)
LRR <95..428 CDD:443914 86/359 (24%)
leucine-rich repeat 99..122 CDD:275380 6/22 (27%)
leucine-rich repeat 123..146 CDD:275380 9/22 (41%)
leucine-rich repeat 147..170 CDD:275380 5/22 (23%)
leucine-rich repeat 171..196 CDD:275380 4/24 (17%)
leucine-rich repeat 197..230 CDD:275380 10/33 (30%)
leucine-rich repeat 231..273 CDD:275380 10/66 (15%)
leucine-rich repeat 274..297 CDD:275380 9/22 (41%)
leucine-rich repeat 298..319 CDD:275380 5/20 (25%)
leucine-rich repeat 322..347 CDD:275380 6/24 (25%)
PPP1R42 336..531 CDD:455733 53/219 (24%)
leucine-rich repeat 348..371 CDD:275380 3/22 (14%)
leucine-rich repeat 424..448 CDD:275380 8/47 (17%)
PPP1R42 446..637 CDD:455733 59/291 (20%)
leucine-rich repeat 449..472 CDD:275380 5/22 (23%)
leucine-rich repeat 473..498 CDD:275380 6/24 (25%)
leucine-rich repeat 499..522 CDD:275380 10/22 (45%)
leucine-rich repeat 523..554 CDD:275380 9/30 (30%)
leucine-rich repeat 555..578 CDD:275380 7/50 (14%)
leucine-rich repeat 579..602 CDD:275380 6/22 (27%)
leucine-rich repeat 603..623 CDD:275380 6/24 (25%)
PCC 607..>689 CDD:188093 24/134 (18%)
Tlr3_TMD 691..720 CDD:465595 4/28 (14%)
TIR 746..890 CDD:214587 14/58 (24%)
Blue background indicates that the domain is not in the aligned region.

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