DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdr50 and ABCB29

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_196011.1 Gene:ABCB29 / 830269 AraportID:AT5G03910 Length:634 Species:Arabidopsis thaliana


Alignment Length:615 Identity:183/615 - (29%)
Similarity:294/615 - (47%) Gaps:89/615 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   729 VKPMLEVMKMNKPEWLQIAVGCISSVIMGCAMPIFAVLFGSILQILSVKDNDQYVRENSNQYSL- 792
            :||.|:  ..:|...|.....|:|.|.:...:|    ..||....|           |:|..|| 
plant    65 IKPYLQ--SESKTVLLGWLCSCVSVVSLSQIVP----RLGSFTSNL-----------NANAASLT 112

  Fly   793 -----YFLIAGIVVG--IATFLQIYFFGIAGERLTERLRGLMFEAMLRQEVAWFDDKANG--TGS 848
                 ..::||:|:.  :|.:||..|...|......::|...:..:|.:|:.:|:. .||  :|.
plant   113 KLKGECLVLAGLVLAKVVAYYLQQAFLWEAALNTVYKIRVFAYRRVLERELEFFEG-GNGISSGD 176

  Fly   849 LCARLSGDAAAVQGATGQRIGTIVQSISTLALGIALSMYYEWSLGLVALAFTPFI--LIAFY--M 909
            :..|::.:|:.|.......:.|:|.|...:::..|..:....:|.||:....|.:  |||:.  .
plant   177 IAYRITAEASEVADTIYALLNTVVPSAIQISVMTAHMIVASPALTLVSAMVIPSVALLIAYLGDR 241

  Fly   910 QRTLMAKENMGSAK--TMENCTKLAV--------EVVSNIR--TVASLGREEMFHQNYIGMLIPA 962
            .|.:..|..:.||:  |..|....|:        |:..::|  ..|....:|.|.:..:..|||.
plant   242 LRKISRKAQIASAQLSTYLNEVLPAILFVKANNAEISESVRFQRFARADLDERFKKKKMKSLIPQ 306

  Fly   963 VEISKRNTHFRGLVYGLARSLMFFAYAACMYYGTWCVIHRG--ILFGDVFKVSQALIMGTASIA- 1024
            :                         ...||.|:..:...|  ||.|.... |.|::...||:| 
plant   307 I-------------------------VQVMYLGSLSIFCVGAVILAGSSLS-SSAIVSFVASLAF 345

  Fly  1025 -----NALAFAPN-MQKGVSAAKTIFTFLRRQPSIVDRP-GVSRDPWHSEGYVRFDKVKFSYPTR 1082
                 ..|..|.| :::|..|.:.:|.....:..:::|| .:..:  ...|.|....:.|.| ..
plant   346 LIDPVQDLGKAYNELKQGEPAIERLFDLTSLESKVIERPEAIQLE--KVAGEVELCDISFKY-DE 407

  Fly  1083 SEIQVLKGLELAVSKGQKIALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVRNVSMTNLRNQ 1147
            :.:.||.||.|.:..|:.:|||||||.||:|.|:|:.|.|:...|:.:||:.|::::.:.:||..
plant   408 NMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIKLLLRLYEPSSGSIIIDKIDIKDIKLESLRKH 472

  Fly  1148 LGIVSQEPILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGYDTRMGEKGAQLS 1212
            :|:|||:..||..||.:||.|.|....:..:.:..|.|.:|..|||.|||.||:|.:|.:|:.||
plant   473 VGLVSQDTTLFSGTIADNIGYRDLTTGIDMKRVELAAKTANADEFIRNLPEGYNTGVGPRGSSLS 537

  Fly  1213 GGQKQRIAIARALIRNPKIMLLDEATSALDAESEKVVQDALDAASEGRTTISIAHRLSTVVHSDV 1277
            ||||||:||||||.:...|::|||||||||:.||.:|::||:...:..|.|.|||||.||:.:..
plant   538 GGQKQRLAIARALYQKSSILILDEATSALDSLSELLVREALERVMQDHTVIVIAHRLETVMMAQR 602

  Fly  1278 IFVFENGLVCE------AGDHKQLLANRGL 1301
            :|:.|.|.:.|      ...||..|.:.||
plant   603 VFLVERGKLKELNRSSLLSTHKDSLTSAGL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 183/615 (30%)
ABC_membrane 92..382 CDD:279056
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216
ABC_membrane 750..1020 CDD:279056 64/297 (22%)
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216 102/238 (43%)
ABCB29NP_196011.1 MdlB 77..613 CDD:224055 173/580 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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