DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdr50 and ABCB16

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_189477.4 Gene:ABCB16 / 822465 AraportID:AT3G28360 Length:1228 Species:Arabidopsis thaliana


Alignment Length:1279 Identity:466/1279 - (36%)
Similarity:700/1279 - (54%) Gaps:111/1279 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 LFRYATKKDRALYVIGLLSAVATGLTTPANSLIFGNLANDMIDLGGLLESGKSYRADDAISTLLL 140
            :|.:|...|..|..:||:.||..|..||....|...|.||.          .|:..:|   ...:
plant    10 IFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDF----------GSFSFND---ETFM 61

  Fly   141 DKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHSQILTIRSKFFRSILHQDMKWYDFN--QSGEV 203
            ..:.:.:|...|:.....|..:|...|:......|...:|.::.|::|.||:.::|.:  .:.::
plant    62 QPISKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLHVTSTSDI 126

  Fly   204 ASRMNEDLSKMEDGLAEKVVMFVHYLVAFVGSLVLAFVKGWQLSLVCLTSLPLTFI---AMGLVA 265
            .:.::.|...::|.|:||:...:....|||||.::.|:..|:|::|....:.|..|   ..|...
plant   127 ITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLIPGLMYGRAL 191

  Fly   266 VATSRLAKKEVTMYAGAAVVAEGALSGIRTVKAFEGEAKEVAAYKERVVAAKILNIKRNMFSGIG 330
            :..||..::|   |..|..:||.|:|.:|||.||..|.|.:..:.:.:..:..|.:::.:..||.
plant   192 IGISRKIREE---YNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKLGLRQGLAKGIA 253

  Fly   331 FGLLWFFIYASYALAFWYGVGLVIKGYHEPAYENYDAGTMITVFFSVMMGSMNIGMAAPYIEAFG 395
            .|... .:||.:....|||..:|:.       ..|..||:.||...|..|...:|.|...::.|.
plant   254 IGSNG-IVYAIWGFLTWYGSRMVMN-------YGYKGGTVSTVTVCVTFGGTALGQALSNLKYFS 310

  Fly   396 IAKGACAKVFHIIEQIPEINPIDGEGKKLNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQ 460
            .|..|..::..:|:::|:|:..:..|..|......:||..|:.:||:|||..|.:.|.|||..|:
plant   311 EAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETLIFDDLCLKIPSGK 375

  Fly   461 TVALVGPSGCGKSTCIQLVQRFYDPQAGNLLFNGTNLKDLDINWLRSRIGVVGQEPILFATSIYE 525
            ||||||.||.||||.|.|:||||||..|::|.:..::.::.:.||||::|:|.|||.||||||.|
plant   376 TVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQMGMVSQEPSLFATSIKE 440

  Fly   526 NIRYGREDATREEIEAAAAAANAAIFIKKLPKGYDTLVGERGAQLSGGQKQRIAIARALIRDPEI 590
            ||.:|:|||:.:|:..||.|:||..||.:.|.||.|.|||||..:|||||||||||||||:.|.|
plant   441 NILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGVHMSGGQKQRIAIARALIKSPII 505

  Fly   591 LLLDEATSALDTASEAKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGTHQELM 655
            |||||||||||..||..||.||:..|.|||||::||||||:|.||.|.|::.|.:||:|:|.:||
plant   506 LLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRLSTIRNADIICVLHNGCIVETGSHDKLM 570

  Fly   656 ELKDHYFNLV------------TTQLGEDDGSVLSPTGDI-YKNFDIKDEDEEEIKVLSEDEDED 707
            |:...|.:||            .|.:|..:|.|.|...|: |...|:.......|.....|    
plant   571 EIDGKYTSLVRLQQMKNEESCDNTSVGVKEGRVSSLRNDLDYNPRDLAHSMSSSIVTNLSD---- 631

  Fly   708 VMVTDEKNKKKKKKKVKDPNEVKPML----EVMKMNKPEWLQIAVGCISSVIMGCAMPIFAVLFG 768
                            ..|.:.||::    .:|.||:|||.....||:|:.:.|...||:|...|
plant   632 ----------------SIPQDKKPLVPSFKRLMAMNRPEWKHALCGCLSASLGGAVQPIYAYSSG 680

  Fly   769 SILQILSVKDNDQYVRENSNQYSLYFLIAGIVVGIATFLQIYFFGIAGERLTERLRGLMFEAMLR 833
            .::.:..:.:::| ::||:..|.|.|....:.....:..|.|.|...||.||:|:|..|...:|.
plant   681 LMISVFFLTNHEQ-IKENTRIYVLLFFGLALFTFFTSISQQYSFSYMGEYLTKRIREQMLSKILT 744

  Fly   834 QEVAWFDDKANGTGSLCARLSGDAAAVQGATGQRIGTIVQSISTLALGIALSMYYEWSLGLVALA 898
            .||.|||::.|.:|::|:||:.||..|:...|:|:..:||:|||:.:...:.:...|...:|.::
plant   745 FEVNWFDEEENSSGAICSRLAKDANVVRSLVGERMSLLVQTISTVMVACTIGLVIAWRFTIVMIS 809

  Fly   899 FTPFILIAFYMQRTLMAKENMGSAKTMENCTKLAVEVVSNIRTVASLGREEMFHQNYIGMLIPAV 963
            ..|.|::.:|:||.|:...:..:....:..:|||.|.||||||:.:...:|.     |..|:..|
plant   810 VQPVIIVCYYIQRVLLKNMSKKAIIAQDESSKLAAEAVSNIRTITTFSSQER-----IMKLLERV 869

  Fly   964 E-----ISKRNTHFRGLVYGLARSLMFFAYAACMYYGTWCVIHRGILFGDVFKVSQA-----LIM 1018
            :     .|.|.:...|::.|..:||:....|...:||       |.|..|...||:|     ||.
plant   870 QEGPRRESARQSWLAGIMLGTTQSLITCTSALNFWYG-------GKLIADGKMVSKAFFELFLIF 927

  Fly  1019 GTA--SIANALAFAPNMQKGVSAAKTIFTFLRRQPSIVDRPGVSRDPWHSEGYVRFDKVK----- 1076
            .|.  :||.|.....::.||.::..::||.|.|:.:|        :|.:.:||: .:|:|     
plant   928 KTTGRAIAEAGTMTTDLAKGSNSVDSVFTVLDRRTTI--------EPENPDGYI-LEKIKGQITF 983

  Fly  1077 ----FSYPTRSEIQVLKGLELAVSKGQKIALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVR 1137
                |:||||..:.:.....:.:.:|:..|:||||..||||.|.||:||||..:|...||..|:|
plant   984 LNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIR 1048

  Fly  1138 NVSMTNLRNQLGIVSQEPILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGYDT 1202
            :..:.:||..:.:|||||.||..||||||.||..:..:.:.|||.|.|.:|.||||.:|..||||
plant  1049 SYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDT 1113

  Fly  1203 RMGEKGAQLSGGQKQRIAIARALIRNPKIMLLDEATSALDAESEKVVQDALDAASEGRTTISIAH 1267
            ..|::|.||||||||||||||.:::||.|:||||||||||::||:||||||:....|:|::.|||
plant  1114 YCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAH 1178

  Fly  1268 RLSTVVHSDVIFVFENGLVCEAGDHKQLLAN--RGLYYTLYKLQ 1309
            ||||:.:.|.|.|.:.|.|.|:|.|..|||.  .|.|::|..||
plant  1179 RLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 464/1276 (36%)
ABC_membrane 92..382 CDD:279056 74/294 (25%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 137/248 (55%)
ABC_membrane 750..1020 CDD:279056 83/279 (30%)
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216 121/249 (49%)
ABCB16NP_189477.4 PTZ00265 21..1208 CDD:240339 456/1252 (36%)
ABC_membrane 26..277 CDD:279056 67/267 (25%)
ABC_MTABC3_MDL1_MDL2 346..583 CDD:213216 137/236 (58%)
ABC_membrane 662..927 CDD:279056 82/277 (30%)
ABC_MTABC3_MDL1_MDL2 981..1222 CDD:213216 119/240 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 145 1.000 Domainoid score I1471
eggNOG 1 0.900 - - E2759_KOG0055
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63700
OrthoDB 1 1.010 - - D186078at2759
OrthoFinder 1 1.000 - - FOG0000106
OrthoInspector 1 1.000 - - mtm951
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X92
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.690

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