DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdr50 and ABCB1

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_181228.1 Gene:ABCB1 / 818265 AraportID:AT2G36910 Length:1286 Species:Arabidopsis thaliana


Alignment Length:1272 Identity:483/1272 - (37%)
Similarity:710/1272 - (55%) Gaps:60/1272 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 DVKQVSYFQLFRYATKKDRALYVIGLLSAVATGLTTPANSLIFGNLANDMIDLGGLLESGKSYRA 131
            :::.|::.:|||:|...|..|..||.:.|...|.:.|.....|.:|.|             |:.:
plant    23 EIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVN-------------SFGS 74

  Fly   132 DDAISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHSQILTIRSKFFRSILHQDMKWYD 196
            :......::::|.:::|....:|..:...|:..|:|:.::...|...:|.|:..:.|:||::::|
plant    75 NSNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFD 139

  Fly   197 FN-QSGEVASRMNEDLSKMEDGLAEKVVMFVHYLVAFVGSLVLAFVKGWQLSLVCLTSLPLTFIA 260
            .. ::.:|...:|.|...::|.::||:..|:||:..||...::.|...|||:||.|..:||..:.
plant   140 TEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVI 204

  Fly   261 MGLVAVATSRLAKKEVTMYAGAAVVAEGALSGIRTVKAFEGEAKEVAAYKERVVAAKILNIKRNM 325
            .|:.....|:|:.|.....:.|..:.|..:..||.|.||.||::...||...:..|:.|..|..:
plant   205 GGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKTGL 269

  Fly   326 FSGIGFGLLWFFIYASYALAFWYGVGLVIKGYHEPAYENYDAGTMITVFFSVMMGSMNIGMAAPY 390
            ..|:|.|..:|.::..|||..||| |.:::      :...:.|..|...|:||:|.:.:|.:||.
plant   270 AKGMGLGATYFVVFCCYALLLWYG-GYLVR------HHLTNGGLAIATMFAVMIGGLALGQSAPS 327

  Fly   391 IEAFGIAKGACAKVFHIIEQIPEINPIDGEGKKLNEPLTTIEFKEVEFQYPTRPEVSILNKLNLK 455
            :.||..||.|.||:|.||:..|.|......|.:|:.....:|.|.|:|.||:||:|.|||...|.
plant   328 MAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLS 392

  Fly   456 IHRGQTVALVGPSGCGKSTCIQLVQRFYDPQAGNLLFNGTNLKDLDINWLRSRIGVVGQEPILFA 520
            :..|:|:||||.||.||||.:.|::|||||.:|.:|.:|.:||.|.:.|||.:||:|.|||.|||
plant   393 VPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFA 457

  Fly   521 TSIYENIRYGREDATREEIEAAAAAANAAIFIKKLPKGYDTLVGERGAQLSGGQKQRIAIARALI 585
            |||.|||..||.||.:.|||.||..|||..||.|||.|:||.|||||.|||||||||||||||::
plant   458 TSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAML 522

  Fly   586 RDPEILLLDEATSALDTASEAKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGT 650
            ::|.||||||||||||:.||..||.||::...||||:|:||||||:|:||.:.|:.:|.|.|.||
plant   523 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGT 587

  Fly   651 HQELMELKDH--YFNLVTTQLGEDD-----------------GSVLSPTGDIYKNFDIKDEDEEE 696
            |.||....::  |..|:..|....:                 .||.||......::.........
plant   588 HDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRL 652

  Fly   697 IKVLSEDEDEDVMVTDEKNKKKKKKKVKDPNEVKPMLEVMKMNKPEWLQIAVGCISSVIMGCAMP 761
            ....:.|....:..:...|.:.:|...||  :......:.|||.|||....:|.:.|||.|....
plant   653 SDFSTSDFSLSIDASSYPNYRNEKLAFKD--QANSFWRLAKMNSPEWKYALLGSVGSVICGSLSA 715

  Fly   762 IFAVLFGSILQILSVKDNDQYVRENSNQYSLYFLIAGIVVGIATF--LQIYFFGIAGERLTERLR 824
            .||.:..::|.:....|: :|:.:..::|.  :|:.|:......|  ||..|:.|.||.||:|:|
plant   716 FFAYVLSAVLSVYYNPDH-EYMIKQIDKYC--YLLIGLSSAALVFNTLQHSFWDIVGENLTKRVR 777

  Fly   825 GLMFEAMLRQEVAWFDDKANGTGSLCARLSGDAAAVQGATGQRIGTIVQSISTLALGIALSMYYE 889
            ..|..|:|:.|:||||.:.|.:..:.|||:.||..|:.|.|.||..|||:.:.:.:........:
plant   778 EKMLSAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQ 842

  Fly   890 WSLGLVALAFTPFILIAFYMQRTLMAKENMGSAKTMENC----TKLAVEVVSNIRTVASLGREEM 950
            |.|.||.:|..|.::.|..:|:..|.    |.:..:|..    |:||.|.::|:||||:...|..
plant   843 WRLALVLVAVFPVVVAATVLQKMFMT----GFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAK 903

  Fly   951 FHQNYIGMLIPAVEISKRNTHFRGLVYGLARSLMFFAYAACMYYGTWCVIHRGILFGDVFKVSQA 1015
            ..:.|...|.|.::.........|..||:|:..::.:||..::|.:|.|.|....|....:|...
plant   904 IVRLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMV 968

  Fly  1016 LIMGTASIANALAFAPNMQKGVSAAKTIFTFLRRQPSI-VDRPGVSRDPWHSEGYVRFDKVKFSY 1079
            |::.....|..|..||:..||..|.:::|..|.|:..| .|.|..:..|....|.|....:.|||
plant   969 LMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSY 1033

  Fly  1080 PTRSEIQVLKGLELAVSKGQKIALVGPSGCGKSTCIQLIQRFYDVDEGATLIDECDVRNVSMTNL 1144
            |:|.:||:.:.|.|....|:.:|||||||||||:.|.||||||:...|..:||..|:|..::..:
plant  1034 PSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAI 1098

  Fly  1145 RNQLGIVSQEPILFDRTIRENISYGDNARNVTDQEIISACKKSNIHEFIANLPLGYDTRMGEKGA 1209
            |..:.||.|||.||..||.|||:||...  .|:.|||.|...::.|:||:.||.||.|.:||:|.
plant  1099 RKHIAIVPQEPCLFGTTIYENIAYGHEC--ATEAEIIQAATLASAHKFISALPEGYKTYVGERGV 1161

  Fly  1210 QLSGGQKQRIAIARALIRNPKIMLLDEATSALDAESEKVVQDALDAASEGRTTISIAHRLSTVVH 1274
            ||||||||||||||||:|..:||||||||||||||||:.||:|||.|..|||:|.:||||||:.:
plant  1162 QLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIRN 1226

  Fly  1275 SDVIFVFENGLVCEAGDHKQLLANR--GLYYTLYKLQ 1309
            :.||.|.::|.|.|.|.|..||.|.  |:|..:.:||
plant  1227 AHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 481/1267 (38%)
ABC_membrane 92..382 CDD:279056 75/290 (26%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 139/238 (58%)
ABC_membrane 750..1020 CDD:279056 82/275 (30%)
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216 127/240 (53%)
ABCB1NP_181228.1 PTZ00265 43..1264 CDD:240339 477/1252 (38%)
ABC_membrane 49..319 CDD:279056 75/289 (26%)
ABC_MTABC3_MDL1_MDL2 368..607 CDD:213216 139/238 (58%)
ABC_membrane 705..970 CDD:279056 81/271 (30%)
ABC_MTABC3_MDL1_MDL2 1024..1263 CDD:213216 127/240 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 172 1.000 Domainoid score I1139
eggNOG 1 0.900 - - E2759_KOG0055
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 876 1.000 Inparanoid score I60
OMA 1 1.010 - - QHG63700
OrthoDB 1 1.010 - - D186078at2759
OrthoFinder 1 1.000 - - FOG0000106
OrthoInspector 1 1.000 - - mtm951
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X92
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.740

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