DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr50 and CG1824

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_572810.1 Gene:CG1824 / 32208 FlyBaseID:FBgn0030403 Length:761 Species:Drosophila melanogaster


Alignment Length:694 Identity:218/694 - (31%)
Similarity:340/694 - (48%) Gaps:110/694 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DASDEEDGSQYHEDVKQVSYFQLFRYATKKDRALYVIGLLSAVATGLTTPANSLIFGNLANDMID 118
            :..:|:..|:.|.|.|     :|:.|...     ::..|:.||...|.....::...||..|:::
  Fly   105 EEEEEDTASEQHFDWK-----RLWTYLEP-----HLWELIGAVCAALIVAYINIRIPNLLGDLVN 159

  Fly   119 LGGLLESGKSYRADDAISTLLLDKVRQFSLQNTYIGIIMLVC--SYLSITCFNYAAHSQILTIRS 181
            .  |.....:|..|...::.:.|..:..|   ..:.:.||..  :::.|...:.........:|.
  Fly   160 T--LARYANTYVMDPINNSFVKDVSKPAS---NLLSLYMLQSGFTFMYIYLLSRVGEQMAAKMRQ 219

  Fly   182 KFFRSILHQDMKWYDFNQSGEVASRMNEDLSKMEDGLAEKVVMFVHYLVAFVGSLVLAFVKGWQL 246
            ..|..|:.||:.::|.|::||:.:|:..|:...:....:.|...:......:|..:..|:....:
  Fly   220 DLFTQIVVQDIAFFDENRTGELVNRLTADVQDFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHM 284

  Fly   247 SLVCLTSLPLTFIAMGLVAVATSRLAKKEVTMYAGAAVVAEGALSGIRTVKA----------FEG 301
            :.:.|.|:|...:.|..:......|:|........|..|.|.|||.||||::          ||.
  Fly   285 AAIALASVPCVVMFMTYLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEA 349

  Fly   302 EAKEVAAYKERVVAAKILNIKRNMFSGIGFGLLWF-----FIYASYALAFWYGVGLVIKGYHEPA 361
            |..|.|...::                :|:|:..|     |...:..|:      .:..|.|..:
  Fly   350 ETNEAARLAQK----------------LGYGIAIFQGLTNFFLNTLVLS------TLFMGGHLMS 392

  Fly   362 YENYDAGTMITVFF------------SVMMGSMNIGMAAPYIEAFGIAKGACAKVFHIIEQIPEI 414
            .|:...|.::....            |:::|:|..||:|.            ::||..:...|::
  Fly   393 TESLSPGALMAFLVASQGVQRSLAQGSILLGTMIRGMSAG------------SRVFEFLSLQPQV 445

  Fly   415 NPIDG---EGKKLNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCI 476
            ..:.|   ..::|:   ..|.|:.|.|.||.:|:..:|...:|.:..||||||||.||.||||..
  Fly   446 ELLRGYIIPQERLH---GEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASGSGKSTIA 507

  Fly   477 QLVQRFYDPQAGNLLFNGTNLKDLDINWLRSRI-GVVGQEPILFATSIYENIRYGREDATREEIE 540
            .||:|||:|.|||:..:|..|.|:...||||.: |.:.|:|:||.|||.||||||:.||..|::.
  Fly   508 SLVERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFIEQQPVLFGTSILENIRYGKPDAGEEDVY 572

  Fly   541 AAAAAANAAIFIKKLPKGYDTLVGERGAQLSGGQKQRIAIARALIRDPEILLLDEATSALDTASE 605
            |||..:.:..|:..||.||.|.|||||.||||||:|||||||||:::|.||:|||||||||..||
  Fly   573 AAARLSQSHDFVTALPDGYATHVGERGTQLSGGQRQRIAIARALLKNPRILILDEATSALDATSE 637

  Fly   606 AKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGTHQELMELKDHYFNLVTTQLG 670
            |:||.||:.|...|||:::||||||:|.||.|||:::|.|||:|.|.|||..:..||.||..|  
  Fly   638 AEVQKALDTVVQNRTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELVRQQ-- 700

  Fly   671 EDDGSVLSPTGDIYKNFDIKDEDEEEIKVLSEDEDEDVMVTDEK 714
                          :..||    :|:::.:     |||:...|:
  Fly   701 --------------ERRDI----QEQVQAV-----EDVVAVKEQ 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 214/679 (32%)
ABC_membrane 92..382 CDD:279056 61/318 (19%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 133/237 (56%)
ABC_membrane 750..1020 CDD:279056
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216
CG1824NP_572810.1 MdlB 119..701 CDD:224055 207/649 (32%)
ABC_membrane 137..415 CDD:279056 57/304 (19%)
ABC_MTABC3_MDL1_MDL2 462..700 CDD:213216 133/237 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I220
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm51436
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - P PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.910

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