DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdr50 and Abcb4

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_032856.2 Gene:Abcb4 / 18670 MGIID:97569 Length:1276 Species:Mus musculus


Alignment Length:1300 Identity:563/1300 - (43%)
Similarity:801/1300 - (61%) Gaps:65/1300 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 NKSKKKSKHDESDASDEEDGSQYHEDVKQVSYFQLFRYATKKDRALYVIGLLSAVATGLTTPANS 106
            |.:.::...|....|....|.:..:.|..:....||||:..:|:....:|.|.|:|.|...|...
Mouse     8 NGTARRLDGDFELGSISNQGREKKKKVNLIGLLTLFRYSDWQDKLFMFLGTLMAIAHGSGLPLMM 72

  Fly   107 LIFGNLANDMIDLGG-----------LLESGKSYRADDAISTLLLDKVRQFSLQNTYIGIIMLVC 160
            ::||.:.:..:|..|           :|..|:          :|.:::.:::...:.:|..:||.
Mouse    73 IVFGEMTDKFVDNTGNFSLPVNFSLSMLNPGR----------ILEEEMTRYAYYYSGLGGGVLVA 127

  Fly   161 SYLSITCFNYAAHSQILTIRSKFFRSILHQDMKWYDFNQSGEVASRMNEDLSKMEDGLAEKVVMF 225
            :|:.::.:..||..||..||.|||.:||.|:|.|:|...:.|:.:|:.:|:||:.:|:.:||.||
Mouse   128 AYIQVSFWTLAAGRQIKKIRQKFFHAILRQEMGWFDIKGTTELNTRLTDDVSKISEGIGDKVGMF 192

  Fly   226 VHYLVAFVGSLVLAFVKGWQLSLVCLTSLPLTFIAMGLVAVATSRLAKKEVTMYAGAAVVAEGAL 290
            ...:..|....::.|::||:|:||.:...|:..::..:.|...|..:.||:..||.|..|||.||
Mouse   193 FQAIATFFAGFIVGFIRGWKLTLVIMAISPILGLSTAVWAKILSTFSDKELAAYAKAGAVAEEAL 257

  Fly   291 SGIRTVKAFEGEAKEVAAYKERVVAAKILNIKRNMFSGIGFGLLWFFIYASYALAFWYGVGLVIK 355
            ..||||.||.|:.||:..|::.:..||.:.||:.:.:.|..|:.:..||||||||||||..|||.
Mouse   258 GAIRTVIAFGGQNKELERYQKHLENAKKIGIKKAISANISMGIAFLLIYASYALAFWYGSTLVIS 322

  Fly   356 GYHEPAYENYDAGTMITVFFSVMMGSMNIGMAAPYIEAFGIAKGACAKVFHIIEQIPEINPIDGE 420
                   :.|..|..:|||||:::|:.::|.|||.|:||..|:||...:|.||:..|:|:.....
Mouse   323 -------KEYTIGNAMTVFFSILIGAFSVGQAAPCIDAFANARGAAYVIFDIIDNNPKIDSFSER 380

  Fly   421 GKKLNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCIQLVQRFYDP 485
            |.|.:.....:||.:|.|.||:|..:.||..||||:..||||||||.|||||||.:||:||.|||
Mouse   381 GHKPDNIKGNLEFSDVHFSYPSRANIKILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDP 445

  Fly   486 QAGNLLFNGTNLKDLDINWLRSRIGVVGQEPILFATSIYENIRYGREDATREEIEAAAAAANAAI 550
            ..|.:..:|.::::.::..||..||||.|||:||:|:|.|||||||.:.|.:|||.|...|||..
Mouse   446 TEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLFSTTIAENIRYGRGNVTMDEIEKAVKEANAYD 510

  Fly   551 FIKKLPKGYDTLVGERGAQLSGGQKQRIAIARALIRDPEILLLDEATSALDTASEAKVQAALEKV 615
            ||.|||:.:|||||:|||||||||||||||||||:|:|:|||||||||||||.|||:|||||:|.
Mouse   511 FIMKLPQKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALDKA 575

  Fly   616 SAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGTHQELMELKDHYFNLVTTQLGEDDGS-VLSP 679
            ..|||||::||||||:|.||.|.....|.:||.|:|.|||:.:..||.||..|..   || :|| 
Mouse   576 REGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKKEGIYFRLVNMQTA---GSQILS- 636

  Fly   680 TGDIYKNFDIKDEDEEEIKVLSEDEDEDVMVTDEKN---KKKKKKKVKDPNE------------- 728
                         :|.|:::..|....||.....|.   :...||.:|.|::             
Mouse   637 -------------EEFEVELSDEKAAGDVAPNGWKARIFRNSTKKSLKSPHQNRLDEETNELDAN 688

  Fly   729 VKPM--LEVMKMNKPEWLQIAVGCISSVIMGCAMPIFAVLFGSILQILSVKDNDQYVRENSNQYS 791
            |.|:  |:|:|:||.||....||.:.::..|...|.|:::...::.|....| |...::..|.:|
Mouse   689 VPPVSFLKVLKLNKTEWPYFVVGTVCAIANGALQPAFSIILSEMIAIFGPGD-DAVKQQKCNMFS 752

  Fly   792 LYFLIAGIVVGIATFLQIYFFGIAGERLTERLRGLMFEAMLRQEVAWFDDKANGTGSLCARLSGD 856
            |.||..|::.....|||.:.||.|||.||.|||.:.|:|||||:::||||..|.||:|..||:.|
Mouse   753 LVFLGLGVLSFFTFFLQGFTFGKAGEILTTRLRSMAFKAMLRQDMSWFDDHKNSTGALSTRLATD 817

  Fly   857 AAAVQGATGQRIGTIVQSISTLALGIALSMYYEWSLGLVALAFTPFILIAFYMQRTLMAKENMGS 921
            ||.||||||.|:..|.|:.:.|..||.:|..|.|.|.|:.|:..|||.:|..::..::|......
Mouse   818 AAQVQGATGTRLALIAQNTANLGTGIIISFIYGWQLTLLLLSVVPFIAVAGIVEMKMLAGNAKRD 882

  Fly   922 AKTMENCTKLAVEVVSNIRTVASLGREEMFHQNYIGMLIPAVEISKRNTHFRGLVYGLARSLMFF 986
            .|.||...|:|.|.:.|||||.||.:|..|...|:..|......|.|..|..|:.:.::::.|:|
Mouse   883 KKEMEAAGKIATEAIENIRTVVSLTQERKFESMYVEKLHGPYRNSVRKAHIYGITFSISQAFMYF 947

  Fly   987 AYAACMYYGTWCVIHRGILFGDVFKVSQALIMGTASIANALAFAPNMQKGVSAAKTIFTFLRRQP 1051
            :||.|..:|::.:::..:.|.||..|..|:::|..::.:|.:|||:..|...:|..:|:...|||
Mouse   948 SYAGCFRFGSYLIVNGHMRFKDVILVFSAIVLGAVALGHASSFAPDYAKAKLSAAYLFSLFERQP 1012

  Fly  1052 SIVDRPGVSRDPWHSEGYVRFDKVKFSYPTRSEIQVLKGLELAVSKGQKIALVGPSGCGKSTCIQ 1116
            .|....|....|...||.|.|::|.|:||||:.:.||:||.|.|.|||.:||||.|||||||.:|
Mouse  1013 LIDSYSGEGLWPDKFEGSVTFNEVVFNYPTRANVPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077

  Fly  1117 LIQRFYDVDEGATLIDECDVRNVSMTNLRNQLGIVSQEPILFDRTIRENISYGDNARNVTDQEII 1181
            |::||||...|:.|:|..:.:.:::..||.|||||||||||||.:|.|||:||||:|.|...||:
Mouse  1078 LLERFYDPMAGSVLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVPHDEIV 1142

  Fly  1182 SACKKSNIHEFIANLPLGYDTRMGEKGAQLSGGQKQRIAIARALIRNPKIMLLDEATSALDAESE 1246
            .|.|::|||.||..||..|:||:|:||.||||||||||||||||||.|:::||||||||||.|||
Mouse  1143 RAAKEANIHPFIETLPQKYNTRVGDKGTQLSGGQKQRIAIARALIRQPRVLLLDEATSALDTESE 1207

  Fly  1247 KVVQDALDAASEGRTTISIAHRLSTVVHSDVIFVFENGLVCEAGDHKQLLANRGLYYTLYKLQSG 1311
            ||||:|||.|.||||.|.|||||||:.::|:|.|.|||.|.|.|.|:||||.:|:|:::..:|:|
Mouse  1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLAQKGIYFSMVNIQAG 1272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 556/1268 (44%)
ABC_membrane 92..382 CDD:279056 100/300 (33%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 145/236 (61%)
ABC_membrane 750..1020 CDD:279056 99/269 (37%)
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216 147/238 (62%)
Abcb4NP_032856.2 PTZ00265 30..1269 CDD:240339 557/1273 (44%)
ABC_membrane 58..342 CDD:279056 100/300 (33%)
ABC_MTABC3_MDL1_MDL2 392..628 CDD:213216 145/235 (62%)
Interaction with HAX1. /evidence=ECO:0000250 622..646 10/40 (25%)
ABC_membrane 712..982 CDD:279056 100/270 (37%)
ABC_MTABC3_MDL1_MDL2 1031..1270 CDD:213216 147/238 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 206 1.000 Domainoid score I2901
eggNOG 1 0.900 - - E2759_KOG0055
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1050 1.000 Inparanoid score I261
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63700
OrthoDB 1 1.010 - - D186078at2759
OrthoFinder 1 1.000 - - FOG0000106
OrthoInspector 1 1.000 - - otm42316
orthoMCL 1 0.900 - - OOG6_100059
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R932
SonicParanoid 1 1.000 - - X92
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.810

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