DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr50 and haf-2

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:NP_495537.2 Gene:haf-2 / 174204 WormBaseID:WBGene00001812 Length:773 Species:Caenorhabditis elegans


Alignment Length:566 Identity:205/566 - (36%)
Similarity:309/566 - (54%) Gaps:58/566 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 LLLDKVRQFSLQNTYIGIIMLVCSYLSIT----------CFNYAAHSQILTIRSKFFRSILHQDM 192
            ::.|.|.:..:|.....||:|.|  |:.|          ||:||.....|.||...|.|::.||:
 Worm   235 VISDIVNKRGIQALIHSIIVLTC--LTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDI 297

  Fly   193 KWYDFNQSGEVASRMNEDLSKMEDGLAEKVVMFVHYLVAFVGSLVLAFVKGWQLSLVCLTSLPLT 257
            .:||..::|:..||:..|...:...::..|.:|:...|..:|:|....:..|:|::|       |
 Worm   298 AFYDTAKTGDTMSRLTSDCQTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMV-------T 355

  Fly   258 FIAMGLVAVAT-------SRLAKKEVTMYAGAAVVAEGALSGIRTVKAFEGEAKEVAAYKERVVA 315
            |||:.||...|       .::::|.....|....:||..:|.:|||::|..|.||:..:::|:.:
 Worm   356 FIAVPLVGFITKAYSSFYDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSS 420

  Fly   316 AKILNIKRN---MFSGIGFGLLW---FFIYASYALAFWYGVGLVIKGYHEPAYENYDAGTMITVF 374
            ...:|.|::   :|      ..|   |...|......:||..||:.|..|..       .:||..
 Worm   421 TLSVNRKKSIAYLF------YTWNNEFCDNAILVAVLFYGGHLVMTGKMEKE-------QLITFL 472

  Fly   375 FSVMMGSMNIGMAAPYIEAFGIAKGACAKVFHIIEQIPEINPIDGEGKKLNEPLT--TIEFKEVE 437
            ...|....|:...:..:.....|.||..|||.::.:.|:.. :||    :..|..  .|.|..|.
 Worm   473 LYQMQLGENLYYLSYVMSGLMEAVGASRKVFDLMNRKPQFE-LDG----MQRPFVNGNITFSHVG 532

  Fly   438 FQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCIQLVQRFYDPQAGNLLFNGTNLKDLDI 502
            |.||:||...:|..|.|.|..|:|||||||||.|||:.:.|::.||:|..|::..:|..:||::.
 Worm   533 FTYPSRPNNPVLKDLTLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDINH 597

  Fly   503 NWLRSRIGVVGQEPILFATSIYENIRYGREDATREEIEAAAAAANAAIFIKKLPKGYDTLVGERG 567
            .:...::.:|.|||:|:..|:..||.||.:.||.:::..|:..||...|:.:|.|||||..||:|
 Worm   598 VYYHQKVALVAQEPVLYNGSVRHNILYGCDFATEDDMLNASKMANVHDFVMELEKGYDTNCGEKG 662

  Fly   568 AQLSGGQKQRIAIARALIRDPEILLLDEATSALDTASEAKVQAALEKVSAGRTTIIVAHRLSTVR 632
            .|:||||||||||||||:|:|.:|:||||||||||.|||.||.||.:.:..||.|||||||||:.
 Worm   663 VQMSGGQKQRIAIARALVRNPAVLILDEATSALDTESEALVQQALSRCAQERTVIIVAHRLSTIE 727

  Fly   633 RADRIVVINKGEVVESGTHQELMELKD-HYFNLVTTQL-----GED 672
            :|::|.||.||.:|:.|||.|||...| .|::||:.|:     |||
 Worm   728 KANKIAVIVKGCLVQMGTHTELMTDTDGMYYSLVSRQMLSAKVGED 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 205/566 (36%)
ABC_membrane 92..382 CDD:279056 69/266 (26%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 121/237 (51%)
ABC_membrane 750..1020 CDD:279056
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216
haf-2NP_495537.2 3a01208 15..761 CDD:273363 199/552 (36%)
ABC_membrane 215..478 CDD:279056 69/264 (26%)
ABC_MTABC3_MDL1_MDL2 526..764 CDD:213216 121/237 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - O PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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