DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr50 and tap1

DIOPT Version :9

Sequence 1:NP_523740.3 Gene:Mdr50 / 36582 FlyBaseID:FBgn0010241 Length:1313 Species:Drosophila melanogaster
Sequence 2:XP_002665053.1 Gene:tap1 / 100333043 ZFINID:ZDB-GENE-050517-43 Length:731 Species:Danio rerio


Alignment Length:541 Identity:185/541 - (34%)
Similarity:292/541 - (53%) Gaps:55/541 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 TYIGIIMLVCSYLSITCFNYAAHSQILTIRSKFFRSILHQDMKWYDFNQSGEVASRMNEDLSKME 215
            |.:.|:..||.::....:|........:|:...|:::|.||:.::|...:|::.||:..|.:.|.
Zfish   207 TLMTIMSAVCEFVCDLIYNITMSRIHTSIQGLVFQAVLKQDIAFFDKATTGDIVSRITTDTNTMS 271

  Fly   216 DGLAEKVVMFVHYLVAFV---GSLVLAFVKGWQLSLVCLT--SLPLTFIAMGLVAVATSRLAKKE 275
            :.|:||:.:.:.|.:..:   ||:::...:     |.|.|  .||:.:|...:......:|:.:.
Zfish   272 ESLSEKLSLLMWYFMRVIFLFGSMLMLSTR-----LCCFTLLGLPVIWIIPEIFGRFYQKLSAQV 331

  Fly   276 VTMYAGAAVVAEGALSGIRTVKAFEGEAKEVAAYKERVVAAKILNIKRNMFSGIGFGLLWFFIYA 340
            ....|.|..||....|.::||::|..|..|...|::.:.....||...               .|
Zfish   332 QDSLAKANEVATETFSSMKTVRSFANEDGETERYRKCLEDTFALNKVE---------------AA 381

  Fly   341 SYALAFW---------------YGVGLVIKGYHEPAYENYDAGTMITVFFSVMMGSMNIGMAAPY 390
            :||::.|               || |.::.|      .:..:|.:::.....:..:..:.:...|
Zfish   382 AYAVSTWTNSMSSLALKVSILYYG-GRLVTG------SDVSSGDLVSFVLYELQFTSAVEVLMSY 439

  Fly   391 IEAFGIAKGACAKVFHIIEQIPEINPIDGEGKKLNEPLTT---IEFKEVEFQYPTRPEVSILNKL 452
            ......|.||..|:|..:::.|::.| ||.    ..|.|.   ::|:.|.|.||.||:..:|..:
Zfish   440 WPHVKKAVGASEKIFEYVDRKPDVPP-DGS----LAPKTLKGHVQFRNVTFAYPKRPDTDVLKNV 499

  Fly   453 NLKIHRGQTVALVGPSGCGKSTCIQLVQRFYDPQAGNLLFNGTNLKDLDINWLRSRIGVVGQEPI 517
            :|::..|:..|||||||.||:|.:.|::|||.||.|.:|.:...|......:|..:|.||.|||:
Zfish   500 SLELKAGKITALVGPSGSGKTTVVSLLERFYQPQNGEILLDQKPLLSYKDQYLHEKISVVSQEPV 564

  Fly   518 LFATSIYENIRYGREDATREEIEAAAAAANAAIFIKKLPKGYDTLVGERGAQLSGGQKQRIAIAR 582
            |||.|:.|||:||:|:||.|||.|||..|||..||..|||||||..||:|.|:||||||||||||
Zfish   565 LFARSVRENIKYGKENATNEEIYAAARLANAHDFISSLPKGYDTDAGEKGGQVSGGQKQRIAIAR 629

  Fly   583 ALIRDPEILLLDEATSALDTASEAKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVE 647
            |||:.|:||:||:|||:|||.||.:|.:||:|.....|.::::||||.|..||.|:.:.:||:||
Zfish   630 ALIQKPQILVLDDATSSLDTESEHRVYSALKKELQSCTVLLISHRLSGVENADHILFLREGELVE 694

  Fly   648 SGTHQELMELKDHYFNLVTTQ 668
            .|.||:|::.:..|...|..|
Zfish   695 EGNHQQLLDKQGFYAEFVKQQ 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr50NP_523740.3 PTZ00265 69..1308 CDD:240339 185/541 (34%)
ABC_membrane 92..382 CDD:279056 51/250 (20%)
ABC_MTABC3_MDL1_MDL2 431..668 CDD:213216 121/236 (51%)
ABC_membrane 750..1020 CDD:279056
ABC_MTABC3_MDL1_MDL2 1070..1309 CDD:213216
tap1XP_002665053.1 3a01208 42..712 CDD:273363 183/536 (34%)
ABC_membrane 166..433 CDD:279056 51/252 (20%)
P-loop_NTPase 467..692 CDD:304359 115/228 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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