DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-1 and smyd4

DIOPT Version :10

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:576 Identity:114/576 - (19%)
Similarity:195/576 - (33%) Gaps:163/576 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CHVCEEPTKN--KCSNCNQVSYCSVQHQKQDW-KVHKPSCHPFKIAHNEQLGRHLVATRTI--KP 63
            ||.|...:.:  .|..|:...||....||..| :.|:..|         .:|..|:|...:  ..
Zfish   246 CHHCLSQSLSFVPCPKCSYARYCGESCQKDAWDQWHQWEC---------PVGADLLAIGVLGHLA 301

  Fly    64 YEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIECEQCGWPL---CGPEC-KSLDEHKAECGL 124
            ..:|||     .|..::.    :|..|   .:||:...:...|:   .|.:| ||||.  .:|  
Zfish   302 LRVVLK-----AGQTEVQ----MGIKN---TKDHVTTYKNDSPVQLSLGGDCGKSLDH--TDC-- 350

  Fly   125 TKDRGQKVNVQEFGG----------PH-----PLYTCLSTVRCLLI-----GETSTEKASKFQDL 169
                        |.|          ||     |....|..:...:|     |.....|...|:| 
Zfish   351 ------------FHGSSYMGIYSLLPHVAQHSPASRFLMAITMAVIYGKLQGGPPPNKWMSFKD- 402

  Fly   170 ESLESTRRGSNQWKADLVSIGQFIPKFFKTQKFTEEEIMKAVGALQINGHEVPTTDPSHV--AVF 232
            |.::::      |:.::..:|....:.....:...:.| .||...:.:|..|.::....:  |:|
Zfish   403 EGVKAS------WQPEMSMLGATALRHMMQLRCNAQAI-TAVRVKEESGMAVQSSSEIRIATAIF 460

  Fly   233 YTASFTENSCLPNLAKSFN-------------KNGH------------CILWAPREIKKNAHLSI 272
            ...|...:||.||.:.||.             ..||            ..:.|.:::.....:..
Zfish   461 PVLSLLNHSCSPNTSISFTTGFQPDPHNQLGCSEGHFDHPKGSRSGVTVTVRASKDLTAGQEILH 525

  Fly   273 CYSD--AMWGTADRQRHLMQTKLFKCACERCV-DVTELDTN--------YSAIKCEDRQCGGLML 326
            ||..  :.....:|||.|::...|:|.|:.|. |::|...|        ...:||      |..|
Zfish   526 CYGPHRSRMEVKERQRLLLEQYFFQCVCQACQRDLSEGSPNAKEHTAPGMKCVKC------GKPL 584

  Fly   327 PTKADEWNGSWRCRECHKQVQKHYVER-------ILERAGKDIQSMEKIAENGLKYL-----KHY 379
            .:..|.:..||  ..|..|:....|:.       :|:.|   :..||:...|...::     ...
Zfish   585 QSHTDGYTCSW--SSCGHQISSADVQNRLQGFQLLLDEA---VHLMEQDRLNEALHILQSAFSQA 644

  Fly   380 EKWLPPQHFHMSEIKILLVQLLAKD----------QKELMVIPDDRLLLKLNFARELVELYEKLT 434
            ...|...|....|:...|.:|.|..          ::.|:.|       :..|..:.:||..:|.
Zfish   645 NSILTETHPFQGELADALARLYASTGEWSLAASHLKRSLVAI-------QAQFGEDSIELGRQLF 702

  Fly   435 PCEVRTLGTLCFELHSAIAE-----QTRRVALETSLSPKDRLEESLFYVDKCVNYL 485
                 .|..|.|.....:|.     :.||: |....||:....:.|..::.|:..|
Zfish   703 -----KLAQLHFNGRDGVASLSVIPRARRL-LSLHCSPRCEELQELSEMEHCLQGL 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:460312 11/38 (29%)
SET_SMYD <217..301 CDD:380997 23/112 (21%)
smyd4NP_001070062.1 NlpI <65..>134 CDD:443815
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:460312 11/38 (29%)
SET_SMYD4 <352..556 CDD:380934 39/211 (18%)
TPR_12 621..683 CDD:315987 10/64 (16%)
Blue background indicates that the domain is not in the aligned region.

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