DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-1 and smyd5

DIOPT Version :9

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_001004614.2 Gene:smyd5 / 447875 ZFINID:ZDB-GENE-040912-39 Length:415 Species:Danio rerio


Alignment Length:412 Identity:84/412 - (20%)
Similarity:125/412 - (30%) Gaps:152/412 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQLGRHLVATRTIKPYEIVLKEAPLVRGP- 77
            |.|||..|.:.                       |...|:.|.|.:..|..:.:..|.|||... 
Zfish    17 KASNCVDVRFI-----------------------NNVKGKGLFAKKPFKKGDTIFIERPLVSSQF 58

  Fly    78 ---AQISAPVCLGCLNGIE-AED-------------------------HIECEQCGWPLCGPECK 113
               |......|..||..:| ||:                         |..|.||....|..||:
Zfish    59 LWNALYKYRACEYCLRALETAEENARRLSGLPALILPHPELCKVRPDRHQACPQCQVMYCSSECR 123

  Fly   114 --SLDE-HKAEC-GLTKDRGQKVNVQEFGGPHPLYTCLSTVRCL-LIGETS-------------- 159
              ::|: ||..| |.:.|          ...||:.......|.: ...|||              
Zfish   124 QAAMDQYHKILCLGPSND----------DPDHPVNKLQDAWRSVHFPPETSSVMILAKMVATIKQ 178

  Fly   160 TEKASKFQDLESLESTRRGSNQWKADLVSIGQ-------FIPKFFKT--------QKFTEEEIMK 209
            |:...::|.|.:...:|..:.:.:.....:|:       .:...|.|        |.||.|....
Zfish   179 TQDKERWQRLFTNFCSRTANEEEEIVHKLLGEKFQGQLGLLRNLFTTALYEDRLSQWFTPEGFRS 243

  Fly   210 AVGALQINGHEVPTTDPS---HV--------------------------------------AVFY 233
            ....:..||..:.|:..|   |.                                      .:|.
Zfish   244 LFSLVGTNGQGIGTSSLSQWVHACDALELPRQQREQLDAFIDQLYKDIDKETGDFLNCEGSGLFL 308

  Fly   234 TASFTENSCLPNLAKSFNKNGHCI-LWAPREIKKNAHLSICYSDAMWGTADRQRH-----LMQTK 292
            ..|...:||:||...||.:|...: |.|..:|.....:.|.|.|..  ..||.||     |.:..
Zfish   309 LQSSCNHSCVPNAEASFPENNFLLHLTALGDIGPGEEICISYLDCC--QRDRSRHSRHKILRENY 371

  Fly   293 LFKCACERCV------DVTELD 308
            ||.|:|::|:      |:|..|
Zfish   372 LFICSCQKCLSQMDDADMTSED 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:280009 5/25 (20%)
smyd5NP_001004614.2 zf-MYND 100..135 CDD:280009 10/34 (29%)
SET <293..350 CDD:214614 13/56 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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