DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-1 and Smyd5

DIOPT Version :10

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster


Alignment Length:376 Identity:75/376 - (19%)
Similarity:121/376 - (32%) Gaps:133/376 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 FKIAHNEQLGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLG------CLNGIE-------- 93
            |:|......||.::||:.....|::.:|.|.|  ..|.|..|..|      |:..:|        
  Fly     4 FEIRELPGKGRAMIATKNFAKDEVIFEEEPFV--SRQFSWNVAYGYAACDHCMRPLETVLENVRR 66

  Fly    94 -AED-------------------HIECEQCGWPLCGPECKSLDE-----HKAEC--GLTKDRGQK 131
             |.|                   ..:|.:|....|..:|  |.|     |:..|  ....|....
  Fly    67 LASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRYCSEDC--LMEAQKRYHRVACMGAFHSDDTHP 129

  Fly   132 VNV-----QEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSIGQ 191
            :||     ::...|....:.:..||.:.:.:.||:|....:.|:|.:|.          :|:..|
  Fly   130 INVLNETWKKMHYPPETGSIMLIVRLMALYQQSTKKEEFLEQLQSFQSL----------IVNREQ 184

  Fly   192 -----FIPKFFKTQ----------KFTEEE--IMKAVGA----LQING----------------- 218
                 .:.:.|:.|          .||.||  |.|...|    :.|.|                 
  Fly   185 KIYHKMLGENFEQQMEQLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAK 249

  Fly   219 -HEVPTTDPSH--------------------------VAVFYTASFTENSCLPNLAKSF-NKNGH 255
             .::|.||...                          ..::...|...:||:||...:| ..|..
  Fly   250 VSDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSCVPNACSTFPYSNDI 314

  Fly   256 CILWAPREIKKNAHLSICYSDAMWGTADRQRH-----LMQTKLFKCACERC 301
            .:|.|...|::...:.|.|.|..  ..:|.||     |.:..:|.|.|.:|
  Fly   315 VVLKALAPIQQGEEICISYLDEC--MLERSRHSRHKVLRENYVFICQCPKC 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:460312
SET_SMYD <217..301 CDD:380997 24/133 (18%)
Smyd5NP_650955.1 SET_SMYD5 3..366 CDD:380919 75/376 (20%)
zf-MYND 87..118 CDD:460312 7/32 (22%)
Blue background indicates that the domain is not in the aligned region.

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