DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-1 and SmydA-6

DIOPT Version :10

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster


Alignment Length:498 Identity:119/498 - (23%)
Similarity:210/498 - (42%) Gaps:80/498 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KIAHNEQLGRHLVATRTIKPYEIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIECEQCGWPLC 108
            :|..|:.|||..||...::..|.:|.|.|:|..|. :....|..|.|..|:    .|.:|.....
  Fly    13 EIKQNDTLGRFAVALCNVRAGETLLLENPIVVLPL-MGERRCSKCFNLTES----FCRKCRLLAL 72

  Fly   109 GPECKSLDEHK----AECGLTKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDL 169
            ..:|...||..    ||...:.|:.:.:..:|.....|:      ::|||:.| ..|....::::
  Fly    73 CEDCSDHDERDCKRLAEMNFSDDQVELLQKKEHTEIQPV------LKCLLLRE-HEETLPLYEEM 130

  Fly   170 ESLES---TRRGSNQWKADLVSIGQFIPKFFKTQKFT----------------EEEIMKAVGALQ 215
            ..::|   ||||:..||.            ::...||                |:.:...:|.|.
  Fly   131 SQMDSQLMTRRGTEVWKN------------YQEHAFTPLDYGGVLAQLRGAADEDLVQGLLGILD 183

  Fly   216 INGHEV--PTTDPSHVAVFYTASFTENSCLPNLAKSFNKNGHCILWAPREIKKNAHLSICYSDAM 278
            ||.:|:  |....:...::..|....:||.|||..|.:......::|.|.|.....|..||::.:
  Fly   184 INAYEIRAPEVGGAMRGLYRRAGLFAHSCTPNLVISIDDEQRIKVYANRFIAAGEILYNCYTNVL 248

  Fly   279 WGTADRQRHLMQTKLFKCACERCVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRC-REC 342
            .||.:|::.|...|.|.|:|.||.|.|||.|:.|:..|....|....:..:.|  .|.|:| ...
  Fly   249 LGTEERRKILKVGKCFDCSCPRCQDPTELGTHMSSFICSQCSCVDGYIVRQPD--TGIWQCLLNP 311

  Fly   343 HKQVQKHYVERILERAGKDI-QSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQLLAKDQK 406
            ...:::.:|..:||||.::| .:.:.|....| .|....:.|...||.|.::|..:..:|.:..:
  Fly   312 EHTLKQEFVSNMLERAKEEIFHARDDIYRQEL-LLAKLSRLLHRNHFLMLDLKQNIASILRQILQ 375

  Fly   407 ELMVIPDDRLL-LKLNFARELVELYEKLTPCEVRTLGTLCFELHSAIAEQTRRVALETSLSPKDR 470
            .:...|:.::. .|:...:|::.:.:.:||...|......:||.:..||..|::..|...|..|.
  Fly   376 NMGTRPNKKVYERKIRLCQEILLVLKVVTPGISRLKAIALYELANTQAELARKMYTEMEHSANDL 440

  Fly   471 LEESLFYVDKCVNYLKYESDIFIEGHVLKQAKIN-RDALRMVM 512
            |.|                        |::.::. |::|||::
  Fly   441 LAE------------------------LERVEVMLRESLRMLL 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:460312
SET_SMYD <217..301 CDD:380997 24/85 (28%)
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 24/85 (28%)
Blue background indicates that the domain is not in the aligned region.

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