DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-1 and Smyd4-4

DIOPT Version :9

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_610730.1 Gene:Smyd4-4 / 36299 FlyBaseID:FBgn0027495 Length:573 Species:Drosophila melanogaster


Alignment Length:366 Identity:70/366 - (19%)
Similarity:110/366 - (30%) Gaps:143/366 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GRHLVATRTIKPYEIVLKEAPLVRGPAQISAPV----CLGCLNGIEAEDH---IECEQ-CGWPLC 108
            ||.:|..|.:...::|..|.|..   :.:..|:    |..|    :.|::   |.|:. |....|
  Fly   196 GRFVVTNRDLAVGDLVSVEEPFC---STLLTPMRYIRCATC----KRENYLTLIPCDSCCSTMFC 253

  Fly   109 GPECKSL---DEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDLE 170
            ..||||:   ..|:.||.:.          :|     |....:.:.|:.: .|:....:.|..:|
  Fly   254 SEECKSIAMQTYHRYECPII----------DF-----LNRMFNKIHCIAL-RTTLVALNIFPSIE 302

  Fly   171 SL-ESTRRGSNQWKA--DLVSIGQFIPKFFKTQKFTEEEIMKAVGALQINGHEVPTTD------- 225
            .| :...:..||.|.  ||           ...:.|.||..:|:..|..|.|....:|       
  Fly   303 ELIDFCEQEQNQDKCAFDL-----------NYNELTPEEHYRAIHGLVTNQHLRSVSDLFQRSVV 356

  Fly   226 ---PSHVAVFYT----------------------------------------------------- 234
               ..|..:.||                                                     
  Fly   357 CAVLKHFIIEYTPVKEYLGGEEGVNFFTDLLFRHLQTSPSNMHGIDLVEQVNETKDDQTHSSGAY 421

  Fly   235 --ASFTENSCLPNLAKSFNKNGHCILWAPREIKK--------NAHLSICYSDAMWGTADRQRHLM 289
              .|...:||.||..:.: :.....::..|.||.        .||.:||..:      .|.:.|.
  Fly   422 AFLSLINHSCAPNTVRIY-EGTKAYMFVLRPIKAGNVLYDNYGAHFAICSKE------QRLKRLS 479

  Fly   290 QTKLFKCACERCVDVTELDTNYSAIKCEDRQCGGLMLPTKA 330
            ....|.|.||.|      :.||....         |:|.||
  Fly   480 LQYRFDCKCEGC------ELNYPMFG---------MMPHKA 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:280009
Smyd4-4NP_610730.1 TPR_11 67..138 CDD:290150
zf-MYND 230..270 CDD:280009 12/43 (28%)
SET 363..463 CDD:279228 10/100 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.