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Protein Alignment SmydA-1 and Smyd2

DIOPT Version :9

Sequence 1:	NP_610944.1	Gene:	SmydA-1 / 36581	FlyBaseID:	FBgn0033917	Length:	513	Species:	Drosophila melanogaster
Sequence 2:	NP_996733.1	Gene:	Smyd2 / 289372	RGDID:	727785	Length:	433	Species:	Rattus norvegicus

Alignment Length:	391	Identity:	84/391 - (21%)
Similarity:	139/391 - (35%)	Gaps:	116/391 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly     5 HVCE-----EPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQLGRHLVATRTIKPY 64
            |.||     :...:||..|.|..||.|:.||:||.:||..|....:     .|.:...:.|
  Rat    50 HHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVV-----FGENWNPSET---- 105

  Fly    65 EIVLKEAPLVRGPAQISAPVCLGCLNGIEAEDHIECEQCGWPLCGPECKSLDEHKAECGLTKDRG 129
                     ||..|:|.|.
  Rat   106 ---------VRLTARILAK---------------------------------------------- 115

  Fly   130 QKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDLES----LESTRRGSNQWKADLVSIG 190
            ||:        ||             ..|.:||....::.||    |::.::...|  :|:.::.
  Rat   116 QKM--------HP-------------ERTPSEKLLAVREFESHLDKLDNEKKDLIQ--SDIAALH 157

  Fly   191 QFIPKFFKTQKFTEEEIMKAVGA-LQINGHEVPTTDPSHV--AVFYTASFTENSCLPNLAKSFNK 252
            ||   :.|..:|.:...:..:.| :..||..:...:.||:  |:|...:...:||.||:..:: |
  Rat   158 QF---YSKHLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTY-K 218

  Fly   253 NGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACERCVDVTELDTNYSAIKCE 317
            .....:.|.:||.....:...|.|.::.|.||...|..:..|.|.|..|   |..|.:.:  |.|
  Rat   219 GTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECREC---TTKDKDKA--KVE 278

  Fly   318 DRQCGGLMLPTKADEWNGSWR-CRECHKQVQ--KHY--VERILERAGKDIQSMEKIAENGLKYLK 377
            .|:   |..|.:|:......| .|...::.:  |||  ...:||......:.|..:.|:...|:.
  Rat   279 IRK---LSNPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYML 340

  Fly   378 H 378
            |
  Rat   341 H 341

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.