DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-1 and set-10

DIOPT Version :9

Sequence 1:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:494 Identity:107/494 - (21%)
Similarity:173/494 - (35%) Gaps:144/494 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VLKEAPL--VRGPAQISAPVCLGCLNGIEAEDHIE---CEQC-GWPLCGPECKSLDE---HKAEC 122
            |.:|.||  |..| |.|...|..|...|::....|   |:.| ....|..:|:..|.   |:.||
 Worm     4 VAREQPLAAVLSP-QFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDWKSCHQFEC 67

  Fly   123 GLTKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKAS----KFQDLESLESTRRGS---N 180
            .:.:.:|...         |:...:.....:|:...||:..|    ..:|||:.....|.|   |
 Worm    68 EILRCQGSST---------PMTLTMKLCIRVLLASRSTQTPSFNGAVLEDLETNYKEFRSSPEHN 123

  Fly   181 QWKADLVSI----GQFI-PKFFKTQK--------------FTEEEIMKAVGA---LQINGHEVPT 223
            |:.:|:::|    ||.| |...:|.|              ...|:.::.:|:   :.:..|....
 Worm   124 QFLSDVLTIISSSGQNIFPTSLETNKTIGIICSVLCNSFSIINEKRVEPIGSGLYVGVAKHNHSC 188

  Fly   224 TDPSHVAVFYTASFTENSCLPNLAKSFNKNGHCILWAPREIKKNAHLSICYSDAMWGTADRQRHL 288
            ...||| ||                    .|:.:.....:.:.:..|:|.|...|..|::|::.:
 Worm   189 ASTSHV-VF--------------------EGNQVFLRTNQEEYSKELTISYVSRMLPTSERRKTI 232

  Fly   289 MQTKLFKCACERCVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHK------QVQ 347
            .......|.||.|.: .|||....:.||..:.|.|.:        .||..|..|.|      :..
 Worm   233 RGVHFLTCQCEMCKN-EELDLIGLSSKCRTKNCTGFV--------KGSGNCSVCEKLAFLPFEQS 288

  Fly   348 KHYVERILERAGKDIQSMEKIAENGLKYLKHYEKWLPPQHFHMSEIKILLVQLLAKDQKELMVIP 412
            .|....:|:           |.||                .|.:. :...||.||..||......
 Worm   289 IHSTLNLLD-----------IIEN----------------LHKTN-QFTTVQELAYLQKLRADYQ 325

  Fly   413 DDRLLLKLNFARELVELYEKLTPC--EVRTLGTLCFELHS-------------AIAEQTRRVALE 462
            |  :|.:.|.|  :::|.|::..|  .:..:..|..:|.:             ...|.|||:.:.
 Worm   326 D--ILAECNVA--ILQLDEQIAYCSSSLENVNDLDLDLIAGRGSEHFITRLGIGAPEVTRRLYIG 386

  Fly   463 ----TSLSPKDRLEESLFYVDKCVNYLK--YESDIFIEG 495
                :.:||..|..       |.|..:|  .||.|...|
 Worm   387 CKCISRISPSKRSV-------KLVKLIKLAIESSIISHG 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:280009
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 10/43 (23%)
SET 57..247 CDD:394802 44/219 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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