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Protein Alignment SmydA-1 and Smyd1

DIOPT Version :9

Sequence 1:	NP_610944.1	Gene:	SmydA-1 / 36581	FlyBaseID:	FBgn0033917	Length:	513	Species:	Drosophila melanogaster
Sequence 2:	NP_001153599.1	Gene:	Smyd1 / 12180	MGIID:	104790	Length:	490	Species:	Mus musculus

Alignment Length:	456	Identity:	83/456 - (18%)
Similarity:	145/456 - (31%)	Gaps:	149/456 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 CHVC--EEPTKNKCSNCNQVSYCSVQHQKQDWKVHKPSCHPFKIAHNEQLGRHLVATRTIKPYEI 66
            ||.|  .:...::|..|....||....||..|..||..|                  ..||.|..
Mouse    52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNEC------------------AAIKKYGK 98

  Fly    67 VLKEAPLVRGPAQI-------SAPVCLGCLNGIEAEDHIECEQCGWPLCGPECKSLDEHKAECGL 124
            |..|.  :|..|:|       ...:..|||..::                    .|..|
Mouse    99 VPNEN--IRLAARIMWRVEREGTGLTEGCLVSVD--------------------DLQNH------ 135

  Fly   125 TKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETSTEKASKFQDLESLESTRRGSNQWKADLVSI 189
                     |:.||                      |:..|               :.:.|:.:.
Mouse   136 ---------VEHFG----------------------EEEQK---------------ELRVDVDTF 154

  Fly   190 GQFIPKFFKTQKFTEEEIMKAVGALQINGHEVPT---TDPSHVAVFYTASFTENSCLPNLAKSFN 251
            .|:.|.  ::|:|:.:.|....|.:..||..:..   .....|.:|.......:.|.||....||
Mouse   155 LQYWPP--QSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFN 217

  Fly   252 KNGH------------CILWAPREIKKNAHLSICYSDAMWGTADRQRHLMQTKLFKCACERCVDV 304
            ...|            ..|.|..:|.:...|::.|.|.:..:.:|:|.|.:...|.|:||.|...
Mouse   218 NGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKG 282

  Fly   305 TELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCRECHKQVQKHYVERILERAGKDIQSMEKIA 369
            .:.|               |.|..|.|            .:..:..|:.:::.:...::.::|..
Mouse   283 LKDD---------------LFLAAKED------------PKPSQEVVKEMIQFSKDTLEKIDKAR 320

  Fly   370 ENGL--KYLKHYEKWLPPQHFHMSEIKILLVQLLAKDQKELMVIPDDRLLLKLNFARELVELYEK 432
            ..||  :.:|...:.|..|....::..:.:::||:...:.|..:  .......::||.:|:.|.|
Mouse   321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL--QAYEEASHYARRMVDGYMK 383

  Fly   433 L 433
            |
Mouse   384 L 384

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.