DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and Usp11

DIOPT Version :10

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001008861.2 Gene:Usp11 / 408217 RGDID:1303052 Length:921 Species:Rattus norvegicus


Alignment Length:681 Identity:158/681 - (23%)
Similarity:238/681 - (34%) Gaps:210/681 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 GLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYIAEQSARRCKP----GGLAKSYRRL 138
            |:.||.|:.|||:||||||.|||:|.:|.||:|    ..|:.|.:.|  .|    |.||::|..|
  Rat   255 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLN----NRYLEELNFR--NPLGMKGELAEAYADL 313

  Fly   139 MQEIWQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEELT-----EQVSM 198
            :::.|...   ...|.|......:......|.||||||:||.|...:|.|||:|.     |.|.:
  Rat   314 VKQTWSGY---HRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVEL 375

  Fly   199 LPQTQNQPQYQSLQQQQPSETDDENDDEAAPASLSHASESEYDTCESS----------------- 246
            .    |......|:..|.:..:.:..:::......|........|...                 
  Rat   376 C----NGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPL 436

  Fly   247 --MSERSAEVLL-------KTEYFVTPCRTNGSNSGLPEGHSVQLQQAP--------LQHQQKNA 294
              .|.|..||..       |.|.........|:.|.|....|.....||        ..|:....
  Rat   437 PVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDKMIVADVFSHRFYKL 501

  Fly   295 SSAEQ--------------------KPIEAAR--------------------------------- 306
            ...|.                    :|:|.:|                                 
  Rat   502 YQLEDPLSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSYYGLILFGHPLL 566

  Fly   307 -SIISDVFDGKLLSSVQCLTCDRVSTR--------------------------EETFQDLSLPIP 344
             |:..|.|..:.|.::......|..|:                          ||..:::|.|..
  Rat   567 VSVPRDRFSWEGLYNILMYRLSRYVTKPTSDDDDGDEKGDENEDEDVEDDSSSEEEKEEMSGPTD 631

  Fly   345 NRD----------------------FLNVLH---------QTHSLSVQSLNAAETSART------ 372
            |..                      ..|.||         :....::|::|:..||.||      
  Rat   632 NDGTQESEQEQAGTSSGVTGRCPSLLDNSLHTSQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEA 696

  Fly   373 -NEGWLSWMWN------------------------MLRSWIYGPSVTLYDCMASFFSADELKGDN 412
             .:.:::..|.                        ||:.   .| |.|.:|:..|.:.:.|:.:|
  Rat   697 QTQPYIAMDWEPEMKRRYYDEVEAEGYVKHDCVGYMLKK---NP-VQLKECIKLFTTVETLEKEN 757

  Fly   413 MYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLSYSSKISSDVYFPLEGFDMRPYIHKDCK 477
            .:.|..|.:.:...|...:..|||||.||||||........|:.:.|.||:...|...::.|. |
  Rat   758 PWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKFSREKLDTLVQFPIRDLDFSEFVIKP-K 821

  Fly   478 SEVA----IYNLSSVICHHGTVGGGHYTCFARNTLNGKWYEFDDQFVTEVSSELVQSCQAYVLFY 538
            :|.|    .|:|.:|..|:|.:..||||.||.|..:|:|:.|||..|:.|:...::|..||||||
  Rat   822 NESAPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFY 886

  Fly   539 HKHN---PQMKLVRDEAMTLSTSHPLCDSDI 566
            .:.:   .|.:....|..|...|....:|||
  Rat   887 QRQDVGRRQSQTASSETPTSPASSSTPNSDI 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 80..538 CDD:425685 148/646 (23%)
DUSP 560..643 CDD:197831 3/7 (43%)
DUSP 667..755 CDD:197831
Usp11NP_001008861.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
UBP12 23..888 CDD:227847 151/650 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 592..697 15/104 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 893..921 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

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