DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and not

DIOPT Version :9

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster


Alignment Length:466 Identity:118/466 - (25%)
Similarity:177/466 - (37%) Gaps:132/466 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 GLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYIAEQSARRCKPGGLAKSYRRLMQEI 142
            ||.||.|:..||:||..:|||.:.|.::.||:  ||..: ...:|:.:|    |.....||.||.
  Fly   156 GLRGLLNLGATCFMNCIVQALVHTPLLSDYFM--SDRHD-CGSKSSHKC----LVCEVSRLFQEF 213

  Fly   143 WQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEELTEQVSMLPQTQNQPQ 207
            :.....|   ::...:|:.|........||:|.|..||....:|.||....:             
  Fly   214 YSGSRSP---LSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVK------------- 262

  Fly   208 YQSLQQQQPSETDDENDDEAAPASLSHASESEYDTCESSMSERSAEVLLKTEYFVTPCRTNGSNS 272
                                  |...|.|:|                           .::||.|
  Fly   263 ----------------------AKAEHESKS---------------------------NSSGSGS 278

  Fly   273 GLPEGHSVQLQQAPLQHQQKNASSAEQKPIEAARSIISDVFDGKLLSSVQCLTCDRVSTREETFQ 337
            |                 ..:::|:..........||..:|.|.|.|.|.|..|:.|||..:.|.
  Fly   279 G-----------------TNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFW 326

  Fly   338 DLSLPIPNRDFLNVLHQTHSLSVQSLNAAETSARTNEGWLSWMWNMLRSWIYGPSVTLYDCMASF 402
            |:||.:                      .||   |..|.::            |. ||.||:..:
  Fly   327 DISLDL----------------------GET---TTHGGVT------------PK-TLIDCLERY 353

  Fly   403 FSADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLSYSSKISSDVYFPLEGFD 467
            ..|:.|.......|..|...:...|...:.|||.|:..|||||.:......||||.:.||:| ||
  Fly   354 TRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVE-FD 417

  Fly   468 MRPYI--HKDCKSEVAIYNLSSVICHHGTVGGGHYTCFARNTLNGKWYEFDDQFVTEVSSELVQS 530
            |.|::  .|:...:.. ::|.:|:.|.||:..||||.:.|:. ...|.:.||..:|..|.:.|..
  Fly   418 MTPFMSEKKNAYGDFR-FSLYAVVNHVGTIDTGHYTAYVRHQ-KDTWVKCDDHVITMASLKQVLD 480

  Fly   531 CQAYVLFYHKH 541
            .:.|:|||||:
  Fly   481 SEGYLLFYHKN 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 79..538 CDD:278850 113/460 (25%)
Peptidase_C19 80..>204 CDD:271592 34/123 (28%)
Peptidase_C19R 307..538 CDD:239139 69/232 (30%)
DUSP 560..643 CDD:197831
DUSP 667..755 CDD:197831
notNP_001287106.1 zf-UBP 46..103 CDD:307999
Peptidase_C19D 158..489 CDD:239125 113/460 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21646
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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