DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp20-33 and usp20

DIOPT Version :10

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_073806154.1 Gene:usp20 / 393962 ZFINID:ZDB-GENE-040426-1219 Length:944 Species:Danio rerio


Alignment Length:799 Identity:326/799 - (40%)
Similarity:446/799 - (55%) Gaps:139/799 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SDSEGTDTAKG--SGTGLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYIAEQSARRC 126
            :|.||:::.:.  ...||.|::||.|:||||:|||||||.||:|.:|.:||.||        |..
Zfish   163 ADEEGSESEEDELKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFQDCSGLV--------RTD 219

  Fly   127 KPGGLAKSYRRLMQEIWQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEE 191
            |...|.|||::|:.|:|.  .....::.|..:.:||:.|:||||||.|.||||||||.|||||||
Zfish   220 KKPALCKSYQKLISELWH--KKRPSYVVPTTLFHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEE 282

  Fly   192 LTEQVSMLPQTQNQPQYQ---SLQQQQPS-ETDDEN--DDEAAPASLSHASESEYDTCES-SMSE 249
            |.|           |.:.   .:.:.:|. ..|..|  |.:.:|      ||.|:.:|:| |.||
Zfish   283 LKE-----------PLFDCSGGISEVEPDLSLDSCNLVDGDRSP------SEDEFLSCDSGSGSE 330

  Fly   250 R--------SAEVLLKTEYFV-------------------------------------------- 262
            |        .||:|::.|...                                            
Zfish   331 RGDGERAGGEAELLIQDECVAVRGTGGISEKERLKERRGEERTREMDEDADVDTAAQDGQAERET 395

  Fly   263 ----------TPCRTNGSN-------SGLP--EGHSVQLQQAPLQHQQKNAS------------- 295
                      .|..|...|       |..|  ..||||...:.|......:|             
Zfish   396 ETATPATAVPAPGNTEPDNEASMHCPSSRPCSPAHSVQELHSRLSSNPPRSSPLRTGPTYTFKKA 460

  Fly   296 ----SAEQKPIEAARSIISDVFDGKLLSSVQCLTCDRVSTREETFQDLSLPIPNRDFLNVLHQTH 356
                |.::|.....||:|||:|||.:||.|||||||||||..|||||||||||.::.|..||.:.
Zfish   461 QMLLSTKKKKQSRFRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSSI 525

  Fly   357 SLSVQSLNAAETSARTNEGWLSWMWNMLR--------SWIYGPSVTLYDCMASFFSADELKGDNM 413
            ..|........|.....:||:|::.:.:|        ||.:||.|||.||:|:||:|||||||||
Zfish   526 HQSAPVKAGVCTDGYAAQGWISYIMDSIRRFVVSCIPSWFWGPMVTLEDCLAAFFAADELKGDNM 590

  Fly   414 YSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLSYSSKISSDVYFPLEGFDMRPYIHKDCKS 478
            ||||||.|||.|:||.:||.|||:|||||||||:::.||.||:|.|.|||||.|::|::.|:..|
Zfish   591 YSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLKPFLAKESPS 655

  Fly   479 EVAIYNLSSVICHHGTVGGGHYTCFARNTLNGKWYEFDDQFVTEVSSELVQSCQAYVLFYHKHNP 543
            ::..|:|.||||||||.|.|||..:.:|.:||:|||||||:||||...:||:.:||||||.|.:.
Zfish   656 QITTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSE 720

  Fly   544 QMKLVRDEAMTLSTSHPLCDSDIQFYITREWLSRLATFSEPGPINNQEMLCPHGGILHSKADVIS 608
            :.  ||:....::.::....|.:||||:||||::..||:|||||.|...||.||||..:|...:.
Zfish   721 ES--VRERQRVVALANLKEPSLLQFYISREWLNKFNTFTEPGPITNHTFLCQHGGIPPTKYHYVD 783

  Fly   609 QIAVPISQPLWDYLYRTFGGGPAVNIIFECEICKRAAETLSRRQQYELNEFTKYN-GLQNEFDST 672
            .:.|.:.|.:|:|||..||||||||.::.|.||:...|||::|::.|::.|.|.| ..|.|...|
Zfish   784 DLVVILPQNVWEYLYNRFGGGPAVNHLYVCAICQVEIETLAKRRKLEIDTFIKLNKEFQAEEAPT 848

  Fly   673 AIYAIAMPWLRSWQQFSRGKTHKDPGPITNEGIAAPTENGSATVSCVRLGSDYAQLNARLWRFLH 737
            .|..|:|.|.|.|:.|.:||.::.||||.|..||. .:.|...   ::.|:||.|::...|::|.
Zfish   849 VILCISMQWFREWENFVKGKDNEPPGPIDNSKIAV-MKGGHIQ---LKQGADYGQISEETWQYLL 909

  Fly   738 NIYGGGPEIILRQALSDED 756
            :||||||||.:||.:|..|
Zfish   910 SIYGGGPEIAVRQTISPPD 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 80..538 CDD:425685 229/560 (41%)
DUSP 560..643 CDD:197831 41/82 (50%)
DUSP 667..755 CDD:197831 36/87 (41%)
usp20XP_073806154.1 None

Return to query results.
Submit another query.