DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and Usp19

DIOPT Version :9

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_006243855.1 Gene:Usp19 / 361190 RGDID:1303276 Length:1359 Species:Rattus norvegicus


Alignment Length:767 Identity:150/767 - (19%)
Similarity:240/767 - (31%) Gaps:280/767 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DSNASDSEGTDTAKGSGTGLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYIAEQSAR 124
            ||...|.|  :..|....|..||.|:.|||:|||.:|:|||...:..:|.:.|      .|....
  Rat   520 DSVEEDEE--EEKKVCLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRS------FEAEIN 576

  Fly   125 RCKP----GGLAKSYRRLMQEIWQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFM 185
            ...|    |.||..:..|::.:|:..   .:...|..:...:.:....|.||.|||.|||:...:
  Rat   577 YNNPLGTGGRLAIGFAVLLRALWKGT---HQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLL 638

  Fly   186 DQLHEELTEQVSMLPQTQN-------------------------------QPQYQS--------- 210
            |.|||:| .::...|.|:.                               |.||:|         
  Rat   639 DGLHEDL-NRIQNKPYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAK 702

  Fly   211 --------------LQQQQP-------------------SETDDENDD------------EAAPA 230
                          |.|:|.                   .....||..            ...|.
  Rat   703 VSITFDPFLYLPVPLPQKQKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVKPE 767

  Fly   231 SL----------------SHASESEYDT----CESSMSERSAE---VLLKTE------------- 259
            ||                ||:.::...|    |...:|...|:   |:|:.:             
  Rat   768 SLRLAEVIKNRFHRVFLPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQVPSIPISKC 832

  Fly   260 --------------------YFVTPCR--------------TNGSNSGLP--------------- 275
                                |.|..|.              ....|.|.|               
  Rat   833 AACQRKQQSEDEKLKRCTRCYRVGYCNQFCQKTHWPDHKGLCRPENIGYPFLVSVPASRLTYARL 897

  Fly   276 ----EG---HSVQLQQAPLQ------------------HQQKNASSAEQKPIEAAR-SIISDVFD 314
                ||   :||.:.|.|.|                  .....|..:|::||:.:. .:::.|.:
  Rat   898 AQLLEGYARYSVSVFQPPFQPGRMALESQSPGCTTLLSTSSLEAGDSEREPIQPSELQLVTPVAE 962

  Fly   315 G------------------------KLLSSVQCLTCDRVSTREETFQDLSLPIPNRDFLNVLHQT 355
            |                        ::|:|.....|..::....:..:.::|.......:|...|
  Rat   963 GDTGAHRMWPPADRGPVPSTSGISSEMLASGPMEGCSLLAGERVSRPEAAVPGYQHSRESVSAHT 1027

  Fly   356 HSLSVQSLNAAETSARTNEGW-----------LSWMW---NMLRSWIYGPS-------------- 392
            ....:..::|:....|..:..           |:.:|   ..|:.::...|              
  Rat  1028 PQFFIYKIDASSREQRLEDKGDTPLELGDDCSLALVWRNNERLQEFVLVASKELECAEDPGSAGE 1092

  Fly   393 ------VTLYDCMASFFSADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFR-NDLS 450
                  .||..|:..|...:.|..:..:.|.:|.:.|...|...:..||.||.:.||||. ....
  Rat  1093 AARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFI 1157

  Fly   451 YSSKISSDVYFPLEGFDMRPYIHKDCKSEVAIYNLSSVICHHGTVGGGHYTCFAR-------NTL 508
            :..||:..|.||:...|:..:.....:.::..|:|.:||.|:|.:.|||||..||       ...
  Rat  1158 WRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPSDRSSQRS 1222

  Fly   509 NGKWYEFDDQFVTEVSSELVQSCQAYVLFYHKHNPQMKLVRDEAMTLSTSHP 560
            :..|..|||..||.|....|.:..||||||.:.|..::  |......:..||
  Rat  1223 DVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSPVE--RPPRAAHAEHHP 1272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 79..538 CDD:278850 138/724 (19%)
Peptidase_C19 80..>204 CDD:271592 39/127 (31%)
Peptidase_C19R 307..538 CDD:239139 62/296 (21%)
DUSP 560..643 CDD:197831 1/1 (100%)
DUSP 667..755 CDD:197831
Usp19XP_006243855.1 p23_like 58..140 CDD:107220
p23_CS_SGT1_like 327..423 CDD:107223
USP19_linker 414..536 CDD:293210 5/17 (29%)
Peptidase_C19 539..>725 CDD:271592 46/195 (24%)
USP7_C2 739..>795 CDD:291217 7/55 (13%)
zf-MYND 832..874 CDD:280009 3/41 (7%)
Peptidase_C19R <1096..1253 CDD:239139 49/156 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5560
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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