DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and Usp44

DIOPT Version :10

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_038934982.1 Gene:Usp44 / 314746 RGDID:1308216 Length:731 Species:Rattus norvegicus


Alignment Length:579 Identity:141/579 - (24%)
Similarity:202/579 - (34%) Gaps:232/579 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 GLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDLVEYI---AEQSARRCK------------ 127
            |:.||:|:.|||||||.||.||:|......|:.. ||.:::   |...||..|            
  Rat   286 GVTGLRNLGNTCYMNSVLQVLSHLLIFRQCFLKL-DLNQWLAVAASDKARSYKHSAVTDAATAAA 349

  Fly   128 -------------------------PGGLAKS--------------YRRLMQEI----------- 142
                                     .||.:|.              |..|..|:           
  Rat   350 HQLNEGQEKEKGFACSRHPGLSSGLSGGASKGRNMELIQPREPSSPYSSLCHELHTLFQVMWSGE 414

  Fly   143 WQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEELTEQVSMLPQTQNQPQ 207
            |       ..::|..:|:.:..:.|.||||.|.|.||||...:|::..||....:.||       
  Rat   415 W-------ALVSPFAMLHSVWKLIPAFRGYAQQDAQEFLCELLDKIQRELETTGTKLP------- 465

  Fly   208 YQSLQQQQPSETDDENDDEAAPASLSHASESEYDTCESSMSERSAEVLLKTEYFVTPCRTNGSNS 272
                                                          .|:.|              
  Rat   466 ----------------------------------------------ALIPT-------------- 470

  Fly   273 GLPEGHSVQLQQAPLQHQQKNASSAEQKPIEAARSIISDVFDGKLLSSVQCLTCDRVSTREETFQ 337
                                    ::::.||...::::::|.|:|||.|.||.|:..|...|.|.
  Rat   471 ------------------------SQRRLIEQVLNVVNNIFHGQLLSQVTCLACNNKSNTIEPFW 511

  Fly   338 DLSLPIPNRDFLNVLHQTHSLSVQSLNAAETSARTNEGWLSWMWNMLRSWIYGPSVTLYDCMASF 402
            ||||..|.|      :|.......|.....|                            |.:..|
  Rat   512 DLSLEFPER------YQCSGKDAASQPCLVT----------------------------DMLGKF 542

  Fly   403 FSADELKGDNMYSCERCNKLRTGIKYSR---VLT----------LPEVLCIHLKRFR-NDLSYSS 453
            ...:.|:| .:|.|:.||..|.  |:|.   |||          ||:||.:|||||| :..:...
  Rat   543 TETEALEG-KIYVCDHCNSKRR--KFSSKPVVLTEAQKQLMICHLPQVLRLHLKRFRWSGRNNRE 604

  Fly   454 KISSDVYFPLEGFDMRPYIHKDCKSEVA--------IYNLSSVICHHGT-VGGGHYTCFARNTLN 509
            ||...|.|. |..:|.||    |.||..        |||||:|:.|||. .|.||||.:..|:..
  Rat   605 KIGVHVVFE-ETLNMEPY----CCSETLNALRPECFIYNLSAVVIHHGKGFGSGHYTAYCYNSEG 664

  Fly   510 GKWYEFDDQFVTEVSSELVQSCQAYVLFYHK---HNPQMKLVRDEAMTLSTSHPLCDSD 565
            |.|...:|..::..:.|.|...|||:|||.:   .|...:|:..|.::.|..||..::|
  Rat   665 GFWVHCNDSKLSMCTMEEVLRAQAYILFYTQRVTENGHSRLLPPELLSNSQQHPSEETD 723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 80..538 CDD:425685 131/545 (24%)
DUSP 560..643 CDD:197831 2/6 (33%)
DUSP 667..755 CDD:197831
Usp44XP_038934982.1 zf-UBP 43..104 CDD:460464
UCH 288..693 CDD:425685 131/545 (24%)
Blue background indicates that the domain is not in the aligned region.

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