DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and usp-33

DIOPT Version :9

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_510570.2 Gene:usp-33 / 181647 WormBaseID:WBGene00010702 Length:716 Species:Caenorhabditis elegans


Alignment Length:647 Identity:154/647 - (23%)
Similarity:227/647 - (35%) Gaps:199/647 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SSNPNPHNP--------YVEHRN--------------RTIHSSQGHTLANGYAMGDPRSSRC--- 43
            ::||.|..|        :|:..|              .|.|.|...:.|:...:...:||.|   
 Worm    53 NNNPRPMLPKQMESRCKHVKDINPSDLSQLLQKKLKCMTCHDSVSFSCAHQDCINSLKSSCCKNS 117

  Fly    44 -----------------HDK--------LFSGSLKSLARREDSNASDSEGTDTAKG---SGTGLV 80
                             ||:        :....:|........:.||....:|.|.   :..||:
 Worm   118 DHLLPHMAVHNHPPILYHDRKSILCTRCMVYTPVKRFLTHTKFSTSDKVEQETRKMEPLAFRGLL 182

  Fly    81 GLQNIANTCYMNSALQALSNLPPMTHYFI---------NCSDLVEYIAEQSARRCKPGGLAKSYR 136
            |..|..||||||:.||.|.:..|.|.|.|         |||..:...|.|         :|...|
 Worm   183 GYLNFGNTCYMNAVLQLLGHCSPFTQYLIELIPPGGWSNCSHDIPKTAIQ---------MALDLR 238

  Fly   137 RLMQEIWQDVDDPKEFIAPRGILYGIRTVHPMFRGYQQHDTQEFLRCFMDQLHEELTEQVSMLPQ 201
            .:..      |.|..:::|..|:..:|...|.|..:||.|..||:|..:|.|..:|         
 Worm   239 NMYS------DFPLPYLSPWKIITCVRNEMPGFECFQQQDASEFMRNLLDILDRDL--------- 288

  Fly   202 TQNQPQYQSLQQQQPSETDDENDDEAAPASLSHASESEYDTCESSMSERSAEVLLKTEYFVTPCR 266
                                                   .||              :||.    |
 Worm   289 ---------------------------------------KTC--------------SEYH----R 296

  Fly   267 TNG-SNSGLPEGHSVQLQQAPLQHQQKNASSAEQKPIEAARSIISDVFDGKLLSSVQCLTCDRVS 330
            ||. ...|.||........||  |               .::.||.:|.|.|.:.:||.:|...|
 Worm   297 TNTLIEMGNPEMDYAIAMNAP--H---------------TKTAISAIFQGVLENQIQCHSCGFRS 344

  Fly   331 TREETFQDLSLPIPNRDFLNVLHQTHSLSVQSLNAAETSARTNEGWLSWMWNMLRSWIYGP---- 391
            ...|.|.|||:||...:....::.:..|...  .|..||:...:|             ..|    
 Worm   345 RTIENFLDLSIPIVGENEFEEMYASKKLDTP--KAPCTSSNIEDG-------------QDPGFLV 394

  Fly   392 ------SVTLYDCMASFFSADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLS 450
                  ..:|..|:..||....|:.||.|||.:|..|....|.::...||||:.|.|||||:.:.
 Worm   395 HQGAFNKTSLESCLDRFFQNSTLQDDNQYSCSKCEVLVDATKSTKAHRLPEVIIIQLKRFRHTMF 459

  Fly   451 YSSKISSDVYFPLEGFDMRPYIHKDCKSEVAIYNLSSVICHHG-TVGGGHYTCFARNTLNGKWYE 514
            .|.|:...|.|||...|...:   ....|.|:|:|...:.|.| ::..|||..:.|:..:.:||:
 Worm   460 GSCKVGKVVEFPLRSQDFGRW---TTSGEPALYDLVGFVVHEGRSLEFGHYVSYCRHEQDNQWYK 521

  Fly   515 FDDQFVTEVSSELVQSCQAYVLFYHKHNPQMKLVRDEAMTLSTSHPLCDSDIQFYITREWLS 576
            |||..||...:..|...|.|:|.|.||...    .:.:::.:|..|     ..|:.:|...|
 Worm   522 FDDMVVTRCDATQVAKSQPYILMYRKHTTN----GEPSISQNTESP-----FNFFASRRLFS 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 79..538 CDD:278850 125/479 (26%)
Peptidase_C19 80..>204 CDD:271592 38/132 (29%)
Peptidase_C19R 307..538 CDD:239139 73/241 (30%)
DUSP 560..643 CDD:197831 4/17 (24%)
DUSP 667..755 CDD:197831
usp-33NP_510570.2 Peptidase_C19 183..546 CDD:239072 124/478 (26%)
UCH 183..545 CDD:278850 124/477 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5560
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_103732
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2011
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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