DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp20-33 and Usp43

DIOPT Version :9

Sequence 1:NP_610943.2 Gene:Usp20-33 / 36580 FlyBaseID:FBgn0033916 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_038940907.1 Gene:Usp43 / 100147704 RGDID:2303824 Length:1136 Species:Rattus norvegicus


Alignment Length:1184 Identity:254/1184 - (21%)
Similarity:373/1184 - (31%) Gaps:441/1184 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GHTLANGYAMGDPRSSRCHDKLFSGSLKSLARREDSN---------------------------- 62
            |..|..|.....||..|...:|.:..|.:|..|..|.                            
  Rat     6 GDALGEGPPAPRPRRRRSLRRLLNRFLLALVSRSRSGDSPPRAPAQPSPYDGDGEGGFACAPGPA 70

  Fly    63 --ASDSEGTDTAKGS-----------GTGLVGLQNIANTCYMNSALQALSNLPPMTHYFINCSDL 114
              :|.|.|.|...||           ..|..||:|..|||:||:.:|.|||           :||
  Rat    71 PASSGSPGPDRPLGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSN-----------TDL 124

  Fly   115 VEYIAEQSARRCKPG--GLAKSYRRLMQEIWQDVDDP------KEFIAPRGILYGIRTVHPMFRG 171
            :.........|..||  .:.:....|::.:|.....|      |..::..|         ..|:|
  Rat   125 LAEFLALGRYRAVPGRAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYG---------SQFQG 180

  Fly   172 YQQHDTQEFLRCFMDQLHEELTEQVSMLPQTQNQPQYQSLQQQQPSETDDENDD---EAAPASL- 232
            ..|||..|||...:|::||:|.      ..|..|.     .:|.|.|....::|   .|||.|| 
  Rat   181 NSQHDALEFLLWLLDRVHEDLE------GSTHGQG-----SEQLPPEASKISEDLRSSAAPPSLG 234

  Fly   233 -----SHASESEYD---TCE---------------------------------SSMSER------ 250
                 || .:::|.   ||.                                 .|.|:|      
  Rat   235 PSFVQSH-FQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGL 298

  Fly   251 ----------------------SAEVLL--------KTEYF------------------VTPCRT 267
                                  :.||:|        :..:|                  |.|...
  Rat   299 AVPILSTVAALRKMVAEEGGVPAEEVILVELYPNGFQRSFFDEEDLNTIAEGDNVYAFQVPPLPG 363

  Fly   268 NGSNSGLPEGHSV---------QLQQAPLQHQQK------NASSAEQKP--------IEAARSII 309
            .|:.:..|.|.||         |....||..:.:      |...:.|:.        |...|:|.
  Rat   364 PGTLAAHPPGLSVSPRLAVRDSQRFSVPLHSENRVLILFCNLVGSGQQASRFGPPFLIREDRTIS 428

  Fly   310 SDVFDGKLLSSVQCLTCDRVSTREETFQDL----------------------SLPIPNRDFLNVL 352
            .......:||.|:||..:.||.     |||                      |.|:.:......|
  Rat   429 WAQLQQCILSKVRCLMRNEVSA-----QDLGTLFSIRVVGLSLACSYLSPQDSRPLCHWAVDRAL 488

  Fly   353 H--------------QTHSLSVQSLNAAETSARTNEGWLSWMWNMLRSWIYGPSVTLYDCMASFF 403
            |              :..|...:.|..:....|..:....|.......   .||.||.:|..|:.
  Rat   489 HLRRPGGPPHVKLAVEWDSSVTERLFGSLQEERVQDADSVWRQQQAHQ---QPSCTLDECFQSYT 550

  Fly   404 SADELKGDNMYSCERCNKLRTGIKYSRVLTLPEVLCIHLKRFRNDLSYSSKISSDVYFPLEGFDM 468
            ..::|..|:.:.|..|..|:.|:....:.|||::|.||||||.......:|:|:.|.|||.|.:|
  Rat   551 KEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNM 615

  Fly   469 RPYIHKDCKSEVA----------------------IYNLSSVICHHGTVGGGHYTCFARNTLNGK 511
            .|::.:...:..|                      :|:|.:|..|||::.|||||.:.||:|:|:
  Rat   616 APHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQ 680

  Fly   512 WYEFDDQFVTEVSSELVQSCQAYVLFYHKHNPQMKLVRDEAMTLSTSHPLCDSDIQFYITREWLS 576
            ||.:||..|..:..:.|.:..||:|||.|.|.........:|..|||..|.|         .||.
  Rat   681 WYSYDDSTVEPLREDEVNTRGAYILFYQKRNSIPPWSASSSMRGSTSSSLSD---------HWLM 736

  Fly   577 RLATFSEPGPINN---------QEMLCPH-----------GGILHSKADV-------------IS 608
            ||      |.:||         ....||.           .|:......|             ||
  Rat   737 RL------GSLNNSTRGSLMSWSSAPCPSVARVPDSPVFTNGVCQQDKGVEAGPLVQGVGGRSIS 795

  Fly   609 QIAVPISQ---------PL-WDYLYRTFGGGPAVNIIFECEICKRAAET-------LSRR----- 651
            ....|.|:         || |.:.:|....|.:|.::...|..:|...|       |:|.     
  Rat   796 MKVPPTSRSRHGPFKTMPLRWSFGHREKRPGASVELVEYLESRRRPRSTSQSIVPLLTRAAGGDE 860

  Fly   652 -------------------------------QQYELNEFTKYNGLQNEFDS------TAIYAIAM 679
                                           ....||..:....|.:...:      .|...|.:
  Rat   861 TSASPRSDATLPAKSDNSGRATGQGTNGVPLSSCHLNHHSALGSLDDGLHTARTRTGNASQDIRL 925

  Fly   680 PW-----LRSWQQFSRGKTHKDPGPITNEGIAAPTENGSATVSCVRLGSDYAQLNARLWRFLHNI 739
            |.     |........|| |..|     ||....|..||:.|.  ...|..:.....|..|..|.
  Rat   926 PKKFDLPLTVMPSAEDGK-HARP-----EGQKMTTWKGSSQVG--SQSSPPSPSTGLLRNFKDNG 982

  Fly   740 YGGGPEIILRQALSDEDDAEEIEIIDQDDECDDDEDQDLEGEGEDEEIAAASYQHNHS---DTES 801
            .|..|::..:.|:               :|...|:|:   |:|....:.:..::..|.   .|||
  Rat   983 LGTLPKMKAKAAM---------------EERAPDKDR---GQGTFTLLKSVFWKKEHKRAVRTES 1029

  Fly   802 NLGIRNTPSPSPS-----TSP---------SPSLTGTRQPM-----ETESDLR--PSS-----SK 840
                 :.|:||.|     .||         ||:|.....|.     .:|.|:|  |||     ..
  Rat  1030 -----SPPAPSISLASDRLSPALNEHARGSSPALRIRESPARGLGNHSERDIRSAPSSLHLPRKA 1089

  Fly   841 SKRSRSKMKVSALR 854
            |:..|:...||:.|
  Rat  1090 SRPPRASAAVSSQR 1103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp20-33NP_610943.2 UCH 79..538 CDD:278850 146/646 (23%)
Peptidase_C19 80..>204 CDD:271592 35/131 (27%)
Peptidase_C19R 307..538 CDD:239139 75/288 (26%)
DUSP 560..643 CDD:197831 24/125 (19%)
DUSP 667..755 CDD:197831 21/98 (21%)
Usp43XP_038940907.1 UBP12 <77..711 CDD:227847 154/673 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5560
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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