DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snrk and Smok

DIOPT Version :10

Sequence 1:NP_610942.2 Gene:Snrk / 36579 FlyBaseID:FBgn0033915 Length:860 Species:Drosophila melanogaster
Sequence 2:NP_001094414.1 Gene:Smok / 290818 RGDID:1562638 Length:654 Species:Rattus norvegicus


Alignment Length:722 Identity:196/722 - (27%)
Similarity:309/722 - (42%) Gaps:179/722 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 YDLEETLGSGHFAVVKLARHVFTGAKVAVKVVDKTKLDDVSKAHLFQEVRCMKLVQHPNVVRLYE 84
            |.:..:||.|.|..||||.|:.|..|||:||:.|:..:.:.|:    |:..||.:.||::::|..
  Rat    24 YRILASLGQGGFGEVKLASHLLTQTKVAIKVLPKSNKNLLLKS----EIEIMKSLDHPHIIKLLH 84

  Fly    85 VIDTQTKLYLVLELGDGGDLYDYIMKHDSG-LSEELARKYFRQILRAITYCHQLHVVHRDLKPEN 148
            :|||...:::|||...||:|...|  .|.| |.||...:.|||::.|:.||||..::|||:||||
  Rat    85 IIDTNENIFIVLEHAVGGELLTRI--EDFGYLPEEECNRLFRQMVLALQYCHQRGIIHRDIKPEN 147

  Fly   149 VVFFEKLGLVKLTDFGFSNKFLPGQKLETFCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLV 213
            ::...| |.|||:|||.|.|.:.||||.|.||:|.|.|||:...:.||..|:|:|||||:||.:.
  Rat   148 ILLDHK-GNVKLSDFGLSTKIVMGQKLTTLCGTLPYCAPELFNLNGYDGQAIDVWSLGVVLYYMA 211

  Fly   214 CGQAPFEKANDSETLTMIMDCKYTVPSHVSTDCRDLIASMLVRDPKKRATVEEIASSAWLKPIDE 278
            .|..||:..........|:..:|:|...:|.|..|:||.:|..:|::|..|.||....|||..:|
  Rat   212 TGCLPFQGFTYQAIKQKILSGRYSVNFRLSPDLWDVIAKLLTVNPRERPRVHEILRFNWLKNENE 276

  Fly   279 PDSTT---STSEHFLP--LVSREQLGEEDHAFIIQKMINGNIASKEEILQALDKNKYNHITATYF 338
            ...::   :|..|..|  ||....:|.|                :.:|.::|.:.|::.:.|||.
  Rat   277 VSPSSLGGNTDSHPDPTILVMMGDMGYE----------------QGQIRESLRERKFDQVMATYL 325

  Fly   339 LLAELRLRRRREELAQKQRLLNDASMKVGDASRKLVPEKPSPTEAQKGGVPISINVTPAAQFAND 403
            :|        ||:...:     |.|:|.           |.||:.             |....:.
  Rat   326 ML--------REKACSE-----DKSIKT-----------PHPTQC-------------AQTLKST 353

  Fly   404 GGKPDKRS--RKCSIVREEDEEESATECTA--VGNELKVTSSSRREAFSDS--PFSRSIHERSSS 462
            |...:|::  |:.|         |....|.  :.::|:..:..:|.....:  |.....::..|.
  Rat   354 GSTTEKQTTLRRGS---------SLPTLTTFYLPSKLESLNKEKRTTMRHTMPPNLNCFNKSESL 409

  Fly   463 EPGNQTKGEQIANSGVPSHSRTKIVVSVDATLAHKLKQMEKSAKIDEDTLSGLKELEIGKLKPLP 527
            ..|.:|         :.||           |::..|....||..:::...:.::.       .:|
  Rat   410 NKGRRT---------IVSH-----------TISPTLNCFNKSESLNKGKRTIVRH-------TMP 447

  Fly   528 SSSKNPVLTHRR--TKLNKIRTPSCSSSEASDDDTKTRNKKKINKFVGDTPVRFRMHRRDSHDDS 590
            ....:||   ||  .:|:|    |.....||:|.:| ||                         |
  Rat   448 PKKTSPV---RRICPRLHK----SFGMGSASEDSSK-RN-------------------------S 479

  Fly   591 SDSQDQLYPPPGSASNAGNFIS--KSGSVSGKKEG-------------QSQYKE---PNNKSD-- 635
            ||       |..:..::.:|:|  |.||...|::.             :.|||.   |:.|.:  
  Rat   480 SD-------PSLTIFSSQSFMSAFKYGSTYSKRKAFLQCILHYHASQEEDQYKTTIIPSGKLNTT 537

  Fly   636 --ENRKSHSQKNRKQHN---KDHVDKHSHAERQLADSSTATTGNSTNRRRRIRESQSLDRITEAQ 695
              .|.....|.....||   ...||..:..|:....|:|||.|...    .|:|.:|:.....|.
  Rat   538 VPPNSLQEDQPTGHLHNVLTAGAVDNRNLQEKSPPFSTTATKGEGP----AIKERESIPSSPRAP 598

  Fly   696 EYEMRHR 702
            ..:.|.|
  Rat   599 REQFRGR 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SnrkNP_610942.2 STKc_SNRK 16..273 CDD:270976 104/253 (41%)
UBA_SNRK 296..338 CDD:270524 7/41 (17%)
SmokNP_001094414.1 STKc_AMPK-like 23..270 CDD:270905 104/252 (41%)
UBA_MARK_Par1 290..329 CDD:270522 12/62 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..369 10/65 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..616 12/47 (26%)

Return to query results.
Submit another query.