DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS23 and AT3G09680

DIOPT Version :9

Sequence 1:NP_001286410.1 Gene:RpS23 / 36576 FlyBaseID:FBgn0033912 Length:143 Species:Drosophila melanogaster
Sequence 2:NP_566351.1 Gene:AT3G09680 / 820125 AraportID:AT3G09680 Length:142 Species:Arabidopsis thaliana


Alignment Length:143 Identity:110/143 - (76%)
Similarity:120/143 - (83%) Gaps:1/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
            |||.||:...||....|..||||||.|||::.|..|| .||..:||||||||||:|:||||||||
plant     1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSA 64

  Fly    66 IRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL 130
            ||||.|||||||||||.||||.||.|||||||||||:|||||||||||||||||||||||:.|||
plant    65 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 129

  Fly   131 LALYKEKKERPRS 143
            |||:|||||:|||
plant   130 LALFKEKKEKPRS 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS23NP_001286410.1 PTZ00067 1..143 CDD:185422 108/141 (77%)
AT3G09680NP_566351.1 PTZ00067 1..142 CDD:185422 108/141 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 196 1.000 Domainoid score I903
eggNOG 1 0.900 - - E1_COG0048
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H799
Inparanoid 1 1.050 230 1.000 Inparanoid score I1143
OMA 1 1.010 - - QHG62190
OrthoDB 1 1.010 - - D1402984at2759
OrthoFinder 1 1.000 - - FOG0002402
OrthoInspector 1 1.000 - - otm3179
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11652
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1594
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.940

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