DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and Tfam

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_112616.2 Gene:Tfam / 83474 RGDID:620682 Length:244 Species:Rattus norvegicus


Alignment Length:130 Identity:27/130 - (20%)
Similarity:59/130 - (45%) Gaps:18/130 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 DLCAPNCGYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNA 243
            ::|| .||   ...|.|..|...|   :..|:..:..::||::::.::..:..|...::||...:
  Rat    20 EMCA-GCG---GRIPSPVSLICIP---KCFSSLGNYPKKPMSSYLRFSTEQLPKFKAKHPDAKVS 77

  Fly   244 DLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQ----SKLRAMQPGGKEQ 304
            :|.:.:...||.|...:::.|  ||:     ...|...||....:.|:    |:|..::...:::
  Rat    78 ELIRKIAAMWRELPEAEKKVY--EAD-----FKAEWKVYKEAVSKYKEQLTPSQLMGLEKEARQK 135

  Fly   305  304
              Rat   136  135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 15/74 (20%)
PHA03273 305..>391 CDD:223031 27/130 (21%)
TfamNP_112616.2 HMG_box 49..116 CDD:459837 15/73 (21%)
HMG-box_SF 134..232 CDD:469606 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..244
Blue background indicates that the domain is not in the aligned region.

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