DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox1

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001074465.1 Gene:sox1 / 779569 XenbaseID:XB-GENE-1018269 Length:401 Species:Xenopus tropicalis


Alignment Length:616 Identity:131/616 - (21%)
Similarity:200/616 - (32%) Gaps:261/616 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 MWSYDYKGDLCAPNCGYLERHKPLPADLKYRPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLAD 235
            |:|...:.||.:|..        .|.....:.||.....|.:.|::|||||||||::.:|:|:|.
 Frog     1 MYSMMMETDLHSPGV--------QPPSNTGQTGGGGGNKANQDRVKRPMNAFMVWSRGQRRKMAQ 57

  Fly   236 ENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRA---- 296
            |||.:||:::||.||.:|:.::..::||:::||:|||.:||.|||:|||||||:.::.|:.    
 Frog    58 ENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYS 122

  Fly   297 -------MQPGGKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNHGQST 354
                   ...||......||..|.||:                                      
 Frog   123 LAGGLLHAAGGGHMGVGLSPGGGGGGT-------------------------------------- 149

  Fly   355 PGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESSPTGGGYDNSLLLKKLTKPS 419
             ||:..|.|:...|.:|...|::.:..       ||             |.|..|:       .:
 Frog   150 -GGVVVQRLESPGSGASAGGYAHMNGW-------AN-------------GAYPGSV-------AA 186

  Fly   420 PSRAAKSRQEKLAKSEEKNKGSQSQGQSQQGIYAATYPLAPTSVAVVAARGMYVTCNNRGLLDHG 484
            .:.||..::.:||.|::     |.|.....|.:...:|..|                      |.
 Frog   187 AAAAAMMQEAQLAYSQQ-----QQQHPGSGGHHPHHHPHHP----------------------HH 224

  Fly   485 HSVKGTFYPPVSVSEDDNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGN 549
            |    ..:.|                     |.|.....|..     |...|..|          
 Frog   225 H----PHHHP---------------------HHNPTPHPPPP-----PPQPMHRY---------- 249

  Fly   550 LRLSMNELSGNEY--LPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDSASGQKCLKYPDT 612
                  ::|..:|  ||.|..|                           .:.|.||...|.|..:
 Frog   250 ------DMSALQYSPLPGAQTY---------------------------MTASPSGYGALGYSSS 281

  Fly   613 NQNYDDYEAEAYSNAMLPATAASYYTQLPYPPTSLAAFPLQLAVPFQQTTSGAYGAQPIQSGYLH 677
            .|.:....:.|...|...|.||:                        ..:|||.||         
 Frog   282 QQQHQGSPSSAAVAAAAAAAAAA------------------------AASSGALGA--------- 313

  Fly   678 YGNYGGYEGMAQSQPQNQAPVHHQQASHSAPP---------SLSVP-------PNQTVTSNSAAI 726
                  ...:.:|:|....|| .....|:.||         |:.:|       |.....:.:||.
 Frog   314 ------LGSLVKSEPSVSPPV-SGGGPHNRPPCPGDLREMISMYLPSGGEAGDPAAAAAAAAAAA 371

  Fly   727 --------SMQQHHHHHFGPAPGMVGVGVGV 749
                    |:.||:.          |.|.||
 Frog   372 AAATSRLHSLPQHYQ----------GAGTGV 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 37/70 (53%)
sox1NP_001074465.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38 10/44 (23%)
SOX-TCF_HMG-box 36..107 CDD:238684 37/70 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..249 16/108 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 320..343 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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