DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox4

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001039084.1 Gene:sox4 / 733893 XenbaseID:XB-GENE-480727 Length:387 Species:Xenopus tropicalis


Alignment Length:431 Identity:117/431 - (27%)
Similarity:168/431 - (38%) Gaps:127/431 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 PGGTQSKSAK----------ESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSL 256
            ||.|.|...|          ...|:|||||||||::|||:|:.:::||:|||::||.|||:|:.|
 Frog    37 PGATASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKQL 101

  Fly   257 TPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPG----GKEQSESSPNPGTGGSK 317
            ...|:.|::.||||||:.||.::|:|||||  ||:.|....:||    |.....|||...||..|
 Frog   102 KDGDKIPFIREAERLRLKHMADYPDYKYRP--RKKVKSGGSKPGDKACGSPGGSSSPTGSTGSGK 164

  Fly   318 SNPKLATPPLATASSSYTTPTDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNADSTE 382
                   ||:..:|.:       ..||..:............:||                    
 Frog   165 -------PPVKKSSGT-------KLCNKPHTKLVLGARAFPEQQP-------------------- 195

  Fly   383 QIESLAANCPPALLNESSPTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQS 447
                    |.|             |:..|.|..|      ||..||||..|......|    |..
 Frog   196 --------CIP-------------DHHSLYKSRT------AASGRQEKKPKHRVYIFG----GAG 229

  Fly   448 QQGIYAATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSEDDNSTSMRNSISA 512
            .||..:...|.:||..:..|...                      .|:|:.| |.|.|.:||..:
 Frog   230 YQGSPSVAVPASPTLSSSSAEAS----------------------DPLSLYE-DGSGSAQNSPGS 271

  Fly   513 LQQH------CNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGNLRLSMNELSGNEYLPSANAYGM 571
            ..:|      .:...||..||..:...|..||.:.|.:.:...|...:.||:     ||.....|
 Frog   272 PSEHDGYTRASSPAPSTSHSSSSSSAASSPSSASSSSSSSDEELEDELLELN-----PSPGFENM 331

  Fly   572 QYEDFLRYQSNDMDYSTSAVEHK-ETTSDSASGQKCLKYPD 611
            ....|          |::|::.. :...:..||.. .::||
 Frog   332 SLGSF----------SSAALDRDLDFNFEPGSGSH-FEFPD 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 39/70 (56%)
sox4NP_001039084.1 SOX-TCF_HMG-box 59..130 CDD:238684 39/70 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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