DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox15 and sox9b

DIOPT Version :9

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_571719.1 Gene:sox9b / 60642 ZFINID:ZDB-GENE-001103-2 Length:407 Species:Danio rerio


Alignment Length:446 Identity:129/446 - (28%)
Similarity:181/446 - (40%) Gaps:125/446 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 SHSHSPMPMVSSAYVGGGTASGSLINSNIPLLGGGGNSVLNKFLSHPHAGMVGGGTGQMEDCTSH 163
            |.|.:|.|.:|....|...||.          |.|.:|                     |...:.
Zfish    11 SVSGAPSPSLSEDSAGSPCASA----------GSGSDS---------------------ETPRAE 44

  Fly   164 SPIEAASMWSYDYKGDLCAPNC----------GYLERHKPLPADLKYRPGGTQSKSAKESRIRRP 218
            .|:.......:        |.|          ||.....|:|..:.   |..:||    ..::||
Zfish    45 PPLHRDEQEKF--------PVCIRDAVSQVLKGYDWSLVPMPVRVS---GSGKSK----PHVKRP 94

  Fly   219 MNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYK 283
            ||||||||:..|:||||:.|.||||:|||.|||.||.|...::||:|||||||||.|..:||:||
Zfish    95 MNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYK 159

  Fly   284 YRPRRRKQSKLRAMQPGGKEQSESSPN---------------------PG--TGGSKSNPKLATP 325
            |:|||||..|..:.:....||::.|.|                     ||  :|.|:..|   ||
Zfish   160 YQPRRRKSVKSGSAESEDGEQTQISTNALFRALQRAETPDSSTGELHSPGEHSGQSQGPP---TP 221

  Fly   326 PLATASSSYTTP-TDESTCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYS-NADSTEQIESLA 388
            |        ||| ||...|:..:....:...   .|:||:......:||... ::|....||:..
Zfish   222 P--------TTPKTDLPVCSKADLKRERERD---RERPLQDGIDFGAVDIGELSSDVISNIEAFD 275

  Fly   389 AN-----CPPALLNESSPTGGGYDN-----SLLLKKLTKPSPSRAAKSRQEKL-AKSEEKNKGSQ 442
            .|     .||.  ....|.|.|:.:     :.:.|.|...|.:.|.:..|::. .|:|:.:.|..
Zfish   276 VNEFDQYLPPH--GAPGPAGAGFSSGYGSAAWMHKPLASSSMANAGEQHQQRAQIKTEQLSPGHY 338

  Fly   443 SQGQSQQGIYAATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVS 498
            ||...||..|:|.|           :|..|...:.:      ||...:.||..|.|
Zfish   339 SQQPPQQQFYSAPY-----------SRAQYTEYSEQ------HSAYYSPYPTFSYS 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 SOX-TCF_HMG-box 214..285 CDD:238684 45/70 (64%)
sox9bNP_571719.1 Sox_N 16..80 CDD:372113 17/102 (17%)
SOX-TCF_HMG-box 90..160 CDD:238684 44/69 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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