DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox15 and sox14

DIOPT Version :10

Sequence 1:NP_523739.2 Gene:Sox15 / 36575 FlyBaseID:FBgn0005613 Length:784 Species:Drosophila melanogaster
Sequence 2:NP_001032769.1 Gene:sox14 / 557661 ZFINID:ZDB-GENE-051113-268 Length:238 Species:Danio rerio


Alignment Length:236 Identity:78/236 - (33%)
Similarity:114/236 - (48%) Gaps:68/236 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 SKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEAERL 271
            ||.|  ..|:|||||||||::.:|:|:|.|||.:||:::||.||.:|:.|:..::|||::||:||
Zfish     2 SKPA--DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPYIDEAKRL 64

  Fly   272 RVIHMTEHPNYKYRPRRRKQSKL---RAMQP----------------------GGKEQSE----- 306
            |..||.|||:|||||||:.::.|   |.:.|                      |..|::.     
Zfish    65 RAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDHLKGLPVSATDSLLGSSEKARAFLPP 129

  Fly   307 -SSP----NPGTGGSKSNPK-------LATPPLATASS-------------------SYTTPTDE 340
             |:|    :|....|.:..|       |||..|..|||                   ::.:||:.
Zfish   130 TSAPYSFLDPSQFSSSAIQKMTEMPHTLATSTLPYASSLGYQNGAFGSLGCPSQHTHTHPSPTNP 194

  Fly   341 S---TCNSTNQNHGQSTPGGLYEQPLKPTYSPSSVDCYSNA 378
            .   .||.|..:.....|...|  .|.|..:.|.:|.||:|
Zfish   195 GYVVPCNCTAWSASSLQPPVAY--ILFPGMTKSGIDPYSSA 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox15NP_523739.2 HMG-box_SoxF 214..289 CDD:438841 43/74 (58%)
PHA03273 305..>391 CDD:223031 26/113 (23%)
sox14NP_001032769.1 HMG-box_SoxB 6..85 CDD:438790 44/78 (56%)
SOXp 77..>95 CDD:463537 7/17 (41%)

Return to query results.
Submit another query.